Search Results - "Daube, S S"

A genetic circuit on a single DNA molecule as an autonomous dissipative nanodevice by Greiss, Ferdinand, Lardon, Nicolas, Schütz, Leonie, Barak, Yoav, Daube, Shirley S., Weinhold, Elmar, Noireaux, Vincent, Bar-Ziv, Roy

“…Realizing genetic circuits on single DNA molecules as self-encoded dissipative nanodevices is a major step toward miniaturization of autonomous biological…”
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From deterministic to fuzzy decision-making in artificial cells by Greiss, Ferdinand, Daube, Shirley S., Noireaux, Vincent, Bar-Ziv, Roy

“…Building autonomous artificial cells capable of homeostasis requires regulatory networks to gather information and make decisions that take time and cost…”
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Computational analysis of protein synthesis, diffusion, and binding in compartmental biochips by Förste, Stefanie, Vonshak, Ohad, Daube, Shirley S., Bar-Ziv, Roy H., Lipowsky, Reinhard, Rudorf, Sophia

“…Protein complex assembly facilitates the combination of individual protein subunits into functional entities, and thus plays a crucial role in biology and…”
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Programming multi-protein assembly by gene-brush patterns and two-dimensional compartment geometry by Vonshak, Ohad, Divon, Yiftach, Förste, Stefanie, Garenne, David, Noireaux, Vincent, Lipowsky, Reinhard, Rudorf, Sophia, Daube, Shirley S., Bar-Ziv, Roy H.

“…The assembly of protein machines in cells is precise, rapid, and coupled to protein synthesis with regulation in space and time. The assembly of natural and…”
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On the Capturing of Low-Energy Electrons by DNA by Ray, S. G., Daube, S. S., Naaman, R., Ratner, Mark A.

“…Many of the mutagenic or lethal effects of ionization radiation can be attributed to damage caused to the DNA by low-energy electrons. To gain insight on the…”
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Chirality-induced spin-selective properties of self-assembled monolayers of DNA on gold by Ray, S G, Daube, S S, Leitus, G, Vager, Z, Naaman, R

“…Here we show that self-assembled monolayers on gold of double-stranded DNA oligomers interact with polarized electrons similarly to a strong and oriented…”
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Controlling the Adsorption and Reactivity of DNA on Gold by Aqua, T, Naaman, R, Daube, S. S

“…Due to its coding nature, the many chemical and enzymatic manipulations that it can undergo, and its relative stability, DNA is being used as a scaffold and a…”
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Electric-Field Manipulation of a Compartmentalized Cell-Free Gene Expression Reaction by Efrat, Yuval, Tayar, Alexandra M, Daube, Shirley S, Levy, Michael, Bar-Ziv, Roy H

“…Direct electric-field manipulation of gene expression reactions would simplify the design of biochemical networks by replacing complex biomolecular…”
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Autonomous synthesis and assembly of a ribosomal subunit on a chip by Levy, Michael, Falkovich, Reuven, Daube, Shirley S., Bar-Ziv, Roy H.

“…Synthesis of ribosomal RNA and proteins from surface-tethered genes allows dynamic reconstruction of ribosome subunit biogenesis. Ribosome biogenesis is an…”
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Boundary-Free Ribosome Compartmentalization by Gene Expression on a Surface by Levy, Michael, Falkovich, Reuven, Vonshak, Ohad, Bracha, Dan, Tayar, Alexandra M, Shimizu, Yoshihiro, Daube, Shirley S, Bar-Ziv, Roy H

“…The design of artificial cell models based on minimal surface-bound transcription–translation reactions aims to mimic the compartmentalization facilitated by…”
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Compartmentalization by directional gene expression by Daube, Shirley S, Bracha, Dan, Buxboim, Amnon, Bar-Ziv, Roy H

“…The coalescence of basic biochemical reactions into compartments is a major hallmark of a living cell. Using surface-bound DNA and a transcription reaction, we…”
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Sequence Dependence of Charge Transport Properties of DNA by Nogues, C, Cohen, S. R, Daube, S, Apter, N, Naaman, R

“…The electrical conduction through three short oligomers (26 base pairs, 8 nm long) with differing numbers of GC base pairs was measured. One strand is…”
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Cell-Free Co-synthesis of Protein Nanoassemblies:  Tubes, Rings, and Doughnuts by Daube, Shirley S, Arad, Talmon, Bar-Ziv, Roy

“…We used a cell-free transcription/translation system to synthesize structural proteins of the T4 bacteriophage. We focused on two proteins that participate in…”
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Synthetic gene brushes: a structure-function relationship by Bar-Ziv, Roy, Buxboim, Amnon, Daube, Shirley S

“…We present the assembly of gene brushes by means of a photolithographic approach that allows us to control the density of end‐immobilized linear…”
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Controlling the Reactivity of Adsorbed DNA on Template Surfaces by Kaufmann, R, Averbukh, I, Naaman, R, Daube, S. S

“…The ability to place DNA on surfaces with increased and controllable reactivity is of fundamental importance in the development of next-generation DNA and…”
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Three-Dimensional Surface Patterning by DNA-Modifying Enzymes by Kaufmann, R, Peled, D, Naaman, R, Daube, S. S

“…Self-assembled patterned multilayers may be fabricated using DNA monolayers and the orchestrated reactions of DNA-modifying enzymes. To demonstrate this…”
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Toward Memory in a DNA Brush: Site-Specific Recombination Responsive to Polymer Density, Orientation, and Conformation by Avidan, Noa, Levy, Michael, Daube, Shirley S., Bar-Ziv, Roy H.

“…Site-specific recombination is a cellular process for the integration, inversion, and excision of DNA segments that could be tailored for memory transactions…”
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Gene Expression on DNA Biochips Patterned with Strand‐Displacement Lithography by Pardatscher, Günther, Schwarz‐Schilling, Matthaeus, Daube, Shirley S., Bar‐Ziv, Roy H., Simmel, Friedrich C.

“…Lithographic patterning of DNA molecules enables spatial organization of cell‐free genetic circuits under well‐controlled experimental conditions. Here, we…”
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Cell-Free Gene Expression from DNA Brushes by Levy, Michael, Vonshak, Ohad, Divon, Yiftach, Greiss, Ferdinand, Avidan, Noa, Daube, Shirley S, Bar-Ziv, Roy H

“…Linear double-stranded DNA polymers coding for synthetic genes immobilized on a surface form a brush as a center for cell-free gene expression, with DNA…”
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Emergent Properties of Dense DNA Phases toward Artificial Biosystems on a Surface by Bracha, Dan, Karzbrun, Eyal, Daube, Shirley S, Bar-Ziv, Roy H

“…Conspectus The expression of genes in a cell in response to external signals or internal programs occurs within an environment that is compartmentalized and…”
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