Whole-brain comparison of rodent and human brains using spatial transcriptomics

The ever-increasing use of mouse models in preclinical neuroscience research calls for an improvement in the methods used to translate findings between mouse and human brains. Previously, we showed that the brains of primates can be compared in a direct quantitative manner using a common reference s...

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Bibliographic Details
Published in:	eLife Vol. 11
Main Authors:	Beauchamp, Antoine, Yee, Yohan, Darwin, Ben C, Raznahan, Armin, Mars, Rogier B, Lerch, Jason P
Format:	Journal Article
Language:	English
Published:	England eLife Sciences Publications Ltd 07-11-2022 eLife Sciences Publications, Ltd
Subjects:	Anatomy Animal models Animals Brain Brain architecture Brain Mapping - methods Brain research Caudate-putamen comparative neuroanatomy Datasets Evolutionary Biology Gene expression Genetic engineering Humans Mars Neocortex Neostriatum Nervous system neuroinformatics Neuroscience Primates Putamen Research Advance Rodentia Sensorimotor system Substantia alba Systems development Transcriptome Transcriptomics translational neuroscience White Matter comparative neuroanatomy mouse evolutionary biology neuroinformatics neuroscience human translational neuroscience
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Summary:	The ever-increasing use of mouse models in preclinical neuroscience research calls for an improvement in the methods used to translate findings between mouse and human brains. Previously, we showed that the brains of primates can be compared in a direct quantitative manner using a common reference space built from white matter tractography data (Mars et al., 2018b). Here, we extend the common space approach to evaluate the similarity of mouse and human brain regions using openly accessible brain-wide transcriptomic data sets. We show that mouse-human homologous genes capture broad patterns of neuroanatomical organization, but the resolution of cross-species correspondences can be improved using a novel supervised machine learning approach. Using this method, we demonstrate that sensorimotor subdivisions of the neocortex exhibit greater similarity between species, compared with supramodal subdivisions, and mouse isocortical regions separate into sensorimotor and supramodal clusters based on their similarity to human cortical regions. We also find that mouse and human striatal regions are strongly conserved, with the mouse caudoputamen exhibiting an equal degree of similarity to both the human caudate and putamen.
Bibliography:	ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 These authors contributed equally to this work.
ISSN:	2050-084X 2050-084X
DOI:	10.7554/eLife.79418