Search Results - "Daniel Putnam"

A Structural Study of CESA1 Catalytic Domain of Arabidopsis Cellulose Synthesis Complex: Evidence for CESA Trimers by Vandavasi, Venu Gopal, Putnam, Daniel K., Zhang, Qiu, Petridis, Loukas, Heller, William T., Nixon, B. Tracy, Haigler, Candace H., Kalluri, Udaya, Coates, Leighton, Langan, Paul, Smith, Jeremy C., Meiler, Jens, O'Neill, Hugh

“…A cellulose synthesis complex with a "rosette" shape is responsible for synthesis of cellulose chains and their assembly into microfibrils within the cell…”
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Evapotranspiration and Yield Impact Tools for More Water-Use Efficient Alfalfa Production in Desert Environments by Montazar, Aliasghar, Putnam, Daniel

“…Drought and climate change have decreased water availability for agriculture, especially in the desert of southwestern USA. Efficiency enhancements in…”
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MethylationToActivity: a deep-learning framework that reveals promoter activity landscapes from DNA methylomes in individual tumors by Williams, Justin, Xu, Beisi, Putnam, Daniel, Thrasher, Andrew, Li, Chunliang, Yang, Jun, Chen, Xiang

“…Although genome-wide DNA methylomes have demonstrated their clinical value as reliable biomarkers for tumor detection, subtyping, and classification, their…”
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Managed winter flooding of alfalfa recharges groundwater with minimal crop damage by Dahlke, Helen E, Brown, Andrew G, Orloff, Steve, Putnam, Daniel, O'Geen, Toby

“…It is well known that California experiences dramatic swings in precipitation that are difficult to predict and challenging to agriculture. In times of…”
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CASP11--An Evaluation of a Modular BCL::Fold-Based Protein Structure Prediction Pipeline by Fischer, Axel W, Heinze, Sten, Putnam, Daniel K, Li, Bian, Pino, James C, Xia, Yan, Lopez, Carlos F, Meiler, Jens

“…In silico prediction of a protein's tertiary structure remains an unsolved problem. The community-wide Critical Assessment of Protein Structure Prediction…”
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Feasibility of Moderate Deficit Irrigation as a Water Conservation Tool in California’s Low Desert Alfalfa by Montazar, Ali, Bachie, Oli, Corwin, Dennis, Putnam, Daniel

“…Irrigation management practices that reduce water use with acceptable impacts on yield are important strategies to cope with diminished water supplies and…”
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The impact of lignin downregulation on alfalfa yield, chemical composition, and in vitro gas production by Getachew, Girma, Laca, Emilio A, Putnam, Daniel H, Witte, Dave, McCaslin, Mark, Ortega, Kara P, DePeters, Edward J

“…BACKGROUND Lignin is a complex, phenolic polymer found in plant cell walls that is essential for mechanical support, water and mineral transport, and defense…”
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The Clonal Evolution of Metastatic Osteosarcoma as Shaped by Cisplatin Treatment by Brady, Samuel W, Ma, Xiaotu, Bahrami, Armita, Satas, Gryte, Wu, Gang, Newman, Scott, Rusch, Michael, Putnam, Daniel K, Mulder, Heather L, Yergeau, Donald A, Edmonson, Michael N, Easton, John, Alexandrov, Ludmil B, Chen, Xiang, Mardis, Elaine R, Wilson, Richard K, Downing, James R, Pappo, Alberto S, Raphael, Benjamin J, Dyer, Michael A, Zhang, Jinghui

“…To investigate the genomic evolution of metastatic pediatric osteosarcoma, we performed whole-genome and targeted deep sequencing on 14 osteosarcoma metastases…”
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Glyphosate‐resistant alfalfa can exhibit injury after glyphosate application in the Intermountain West by Loveland, L. Chet, Orloff, Steve B., Yost, Matt A., Bohle, Mylen, Galdi, Giuliano C., Getts, Thomas, Putnam, Daniel H., Ransom, Corey V., Samac, Deborah A., Wilson, Rob, Creech, J. Earl

“…Glyphosate‐resistant (GR) alfalfa (Medicago sativa L.) has been widely adopted in the United States. Exceptional tolerance of GR alfalfa to glyphosate…”
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Midsummer Deficit Irrigation of Alfalfa for Water Conservation in the San Joaquin Valley of California by Bali, Khaled M., Putnam, Daniel, Wang, Dong, Begna, Sultan, Holder, Brady, Mohamed, Abdelmoneim Zakaria, Paloutzian, Luke, Dahlke, Helen E., Eltarabily, Mohamed Galal

“…AbstractA four-year research experiment was conducted on sandy loam soil at the University of California Kearney Agricultural Research and Extension Center in…”
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Field performance of switchgrass plants engineered for reduced recalcitrance by Eudes, Aymerick, Lin, Chien-Yuan, De Ben, Christopher, Ortega, Jasmine, Lee, Mi Yeon, Chen, Yi-Chun, Li, Guotian, Putnam, Daniel H, Mortimer, Jenny C, Ronald, Pamela C, Scown, Corinne D, Scheller, Henrik V

“…Switchgrass ( L.) is a promising perennial bioenergy crop that achieves high yields with relatively low nutrient and energy inputs. Modification of cell wall…”
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VCF2CNA: A tool for efficiently detecting copy-number alterations in VCF genotype data and tumor purity by Putnam, Daniel K., Ma, Xiaotu, Rice, Stephen V., Liu, Yu, Newman, Scott, Zhang, Jinghui, Chen, Xiang

“…VCF2CNA is a tool (Linux commandline or web-interface) for copy-number alteration (CNA) analysis and tumor purity estimation of paired tumor-normal VCF variant…”
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Molecular Mechanism of Telomere Length Dynamics and Its Prognostic Value in Pediatric Cancers by Wang, Zhaoming, Rice, Stephen V, Chang, Ti-Cheng, Liu, Yu, Liu, Qi, Qin, Na, Putnam, Daniel K, Shelton, Kyla, Lanctot, Jennifer Q, Wilson, Carmen L, Ness, Kirsten K, Rusch, Michael C, Edmonson, Michael N, Wu, Gang, Easton, John, Kesserwan, Chimene A, Downing, James R, Chen, Xiang, Nichols, Kim E, Yasui, Yutaka, Robison, Leslie L, Zhang, Jinghui

“…Abstract Background We aimed to systematically evaluate telomere dynamics across a spectrum of pediatric cancers, search for underlying molecular mechanisms,…”
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Salinity and cultivar effects on alfalfa forage yield and nutritive value in a Mediterranean climate by Anderson, Aaron W., Gull, Umair, Benes, Sharon E., Singh, Simarjeet, Hutmacher, Robert B., Brummer, Edward Charles, Putnam, Daniel H.

“…Background Soil and water salinity are increasing problems worldwide, causing significantly reduced crop yields. Alfalfa (Medicago sativa L.) is often listed…”
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Correction to “Expression of Dehydroshikimate Dehydratase in Sorghum Improves Biomass Yield, Accumulation of Protocatechuate, and Biorefinery Economics” by Tian, Yang, Yang, Minliang, Lin, Chien-Yuan, Park, Joon-Hyun, Wu, Chuan-Yin, Kakumanu, Ramu, De Ben, Christopher M., Dalton, Jutta, Vuu, Khanh M., Shih, Patrick M., Baidoo, Edward E. K., Temple, Stephen, Putnam, Daniel H., Scheller, Henrik V., Scown, Corinne D., Eudes, Aymerick

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Estimation of alfalfa fall dormancy using spaced plant and sward trials across multiple environments by Newell, Scott A., Undersander, Daniel J., Viands, Donald, Hansen, Julie, Orloff, Steve, Putnam, Daniel H., Brummer, E. Charles, Wang, Zeng–Yu

“…Background Alfalfa is a globally important forage crop. Cultivars are characterized by fall dormancy (FD). FD affects biomass yield and winter survival and is…”
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BCL::SAXS: GPU accelerated Debye method for computation of small angle X-ray scattering profiles by Putnam, Daniel K., Weiner, Brian E., Woetzel, Nils, Lowe Jr, Edward W., Meiler, Jens

“…ABSTRACT Small angle X‐ray scattering (SAXS) is an experimental technique used for structural characterization of macromolecules in solution. Here, we…”
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Setting research and extension priorities for agronomic crops in California by Kanter, Jessica, Leinfelder-Miles, Michelle, Clark, Nicholas, Lundy, Mark E., Koundinya, Vikram, Long, Rachael, Light, Sarah E., Brim-DeForest, Whitney B., Linquist, Bruce, Putnam, Daniel, Hutmacher, Robert B., Pittelkow, Cameron M.

“…Agronomic crop production in California, including grains and animal feed, faces multiple challenges that could be addressed by extension support. This means…”
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Engineering sorghum for higher 4-hydroxybenzoic acid content by Lin, Chien-Yuan, Tian, Yang, Nelson-Vasilchik, Kimberly, Hague, Joel, Kakumanu, Ramu, Lee, Mi Yeon, Pidatala, Venkataramana R., Trinh, Jessica, De Ben, Christopher M., Dalton, Jutta, Northen, Trent R., Baidoo, Edward E.K., Simmons, Blake A., Gladden, John M., Scown, Corinne D., Putnam, Daniel H., Kausch, Albert P., Scheller, Henrik V., Eudes, Aymerick

“…Engineering bioenergy crops to accumulate coproducts in planta can increase the value of lignocellulosic biomass and enable a sustainable bioeconomy. In this…”
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Engineered reduction of S-adenosylmethionine alters lignin in sorghum by Tian, Yang, Gao, Yu, Turumtay, Halbay, Turumtay, Emine Akyuz, Chai, Yen Ning, Choudhary, Hemant, Park, Joon-Hyun, Wu, Chuan-Yin, De Ben, Christopher M, Dalton, Jutta, Louie, Katherine B, Harwood, Thomas, Chin, Dylan, Vuu, Khanh M, Bowen, Benjamin P, Shih, Patrick M, Baidoo, Edward E K, Northen, Trent R, Simmons, Blake A, Hutmacher, Robert, Atim, Jackie, Putnam, Daniel H, Scown, Corinne D, Mortimer, Jenny C, Scheller, Henrik V, Eudes, Aymerick

“…Lignin is an aromatic polymer deposited in secondary cell walls of higher plants to provide strength, rigidity, and hydrophobicity to vascular tissues. Due to…”
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