Search Results - "Dabrowski, Piotr Wojciech"

NGS read classification using AI by Voigt, Benjamin, Fischer, Oliver, Krumnow, Christian, Herta, Christian, Dabrowski, Piotr Wojciech

“…Clinical metagenomics is a powerful diagnostic tool, as it offers an open view into all DNA in a patient's sample. This allows the detection of pathogens that…”
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Seasonal recurrence of cowpox virus outbreaks in captive cheetahs (Acinonyx jubatus) by Stagegaard, Julia, Kurth, Andreas, Stern, Daniel, Dabrowski, Piotr Wojciech, Pocknell, Ann, Nitsche, Andreas, Schrick, Livia

“…Cowpox virus infections in captive cheetahs (Acinonyx jubatus) with high morbidity and mortality have already been reported in the UK and Russia in the 1970s…”
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RAMBO-K: Rapid and Sensitive Removal of Background Sequences from Next Generation Sequencing Data by Tausch, Simon H, Renard, Bernhard Y, Nitsche, Andreas, Dabrowski, Piotr Wojciech

“…The assembly of viral or endosymbiont genomes from Next Generation Sequencing (NGS) data is often hampered by the predominant abundance of reads originating…”
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Comparative genomic analysis of two novel sporadic Shiga toxin-producing Escherichia coli O104:H4 strains isolated 2011 in Germany by Tietze, Erhard, Dabrowski, Piotr Wojciech, Prager, Rita, Radonic, Aleksandar, Fruth, Angelika, Auraß, Philipp, Nitsche, Andreas, Mielke, Martin, Flieger, Antje

“…A large outbreak of gastrointestinal disease occurred in 2011 in Germany which resulted in almost 4000 patients with acute gastroenteritis or hemorrhagic…”
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PathoLive—Real-Time Pathogen Identification from Metagenomic Illumina Datasets by Tausch, Simon H., Loka, Tobias P., Schulze, Jakob M., Andrusch, Andreas, Klenner, Jeanette, Dabrowski, Piotr Wojciech, Lindner, Martin S., Nitsche, Andreas, Renard, Bernhard Y.

“…Over the past years, NGS has become a crucial workhorse for open-view pathogen diagnostics. Yet, long turnaround times result from using massively parallel…”
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Correction: NGS read classification using AI by Voigt, Benjamin, Fischer, Oliver, Krumnow, Christian, Herta, Christian, Dabrowski, Piotr Wojciech

“…[This corrects the article DOI: 10.1371/journal.pone.0261548.]…”
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Critical Assessment of Metagenome Interpretation: the second round of challenges by Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Antipov, Dmitry, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J., Brown, C. Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Clausen, Philip T. L. C., Dabrowski, Piotr Wojciech, Darling, Aaron E., Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A., Hansen, Lars Hestbjerg, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Jørgensen, Tue Sparholt, Kieser, Silas D., Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Kwan, Jason, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marcelino, Vanessa R., Marchet, Camille, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R., Milanese, Alessio, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas, Peterlongo, Pierre, Piro, Vitor C., Porter, Jacob S., Rasmussen, Simon, Rees, Evan R., Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L., Ruscheweyh, Hans-Joachim, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn

“…Evaluating metagenomic software is key for optimizing metagenome interpretation and focus of the Initiative for the Critical Assessment of Metagenome…”
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Multiplex Pyrosequencing®: Simultaneous Genotyping Based on SNPs from Distant Genomic Regions by Dabrowski, Piotr Wojciech, Bourquain, Kati, Nitsche, Andreas

“…Pyrosequencing(®) is a technique that allows the quick sequencing of short stretches of DNA, and results can be inspected in real time as they are generated…”
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Rapid characterisation of Klebsiella oxytoca isolates from contaminated liquid hand soap using mass spectrometry, FTIR and Raman spectroscopy by Dieckmann, Ralf, Hammerl, Jens Andre, Hahmann, Hartmut, Wicke, Amal, Kleta, Sylvia, Dabrowski, Piotr Wojciech, Nitsche, Andreas, Stämmler, Maren, Al Dahouk, Sascha, Lasch, Peter

“…Microbiological monitoring of consumer products and the efficiency of early warning systems and outbreak investigations depend on the rapid identification and…”
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An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action [version 2; peer review: 2 approved] by Anzt, Hartwig, Bach, Felix, Druskat, Stephan, Löffler, Frank, Loewe, Axel, Renard, Bernhard Y, Seemann, Gunnar, Struck, Alexander, Achhammer, Elke, Aggarwal, Piush, Appel, Franziska, Bader, Michael, Brusch, Lutz, Busse, Christian, Chourdakis, Gerasimos, Dabrowski, Piotr Wojciech, Ebert, Peter, Flemisch, Bernd, Friedl, Sven, Fritzsch, Bernadette, Funk, Maximilian D, Gast, Volker, Goth, Florian, Grad, Jean-Noël, Hegewald, Jan, Hermann, Sibylle, Hohmann, Florian, Janosch, Stephan, Kutra, Dominik, Linxweiler, Jan, Muth, Thilo, Peters-Kottig, Wolfgang, Rack, Fabian, Raters, Fabian H.C, Rave, Stephan, Reina, Guido, Reißig, Malte, Ropinski, Timo, Schaarschmidt, Joerg, Seibold, Heidi, Thiele, Jan P, Uekermann, Benjamin, Unger, Stefan, Weeber, Rudolf

“…Research software has become a central asset in academic research. It optimizes existing and enables new research methods, implements and embeds research…”
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An environment for sustainable research software in Germany and beyond: Current state, open challenges, and call for action by Anzt, Hartwig, Bach, Felix, Druskat, Stephan, Löffler, Frank, Loewe, Axel, Renard, Bernhard Y, Seemann, Gunnar, Struck, Alexander, Achhammer, Elke, Aggarwal, Piush, Appel, Franziska, Bader, Michael, Brusch, Lutz, Busse, Christian, Chourdakis, Gerasimos, Dabrowski, Piotr Wojciech, Ebert, Peter, Flemisch, Bernd, Friedl, Sven, Fritzsch, Bernadette, Funk, Maximilian D, Gast, Volker, Goth, Florian, Grad, Jean-Noël, Hermann, Sibylle, Hohmann, Florian, Janosch, Stephan, Kutra, Dominik, Linxweiler, Jan, Muth, Thilo, Peters-Kottig, Wolfgang, Rack, Fabian, Raters, Fabian H.C, Rave, Stephan, Reina, Guido, Reißig, Malte, Ropinski, Timo, Schaarschmidt, Joerg, Seibold, Heidi, Thiele, Jan P, Uekermann, Benjamin, Unger, Stefan, Weeber, Rudolf

“…Research software has become a central asset in academic research. It optimizes existing and enables new research methods, implements and embeds research…”
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Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group by Austin, Claire C, Bernier, Alexander, Bezuidenhout, Louise, Bicarregui, Juan, Biro, Timea, Cambon-Thomsen, Anne, Carroll, Stephanie Russo, Cournia, Zoe, Dabrowski, Piotr Wojciech, Diallo, Gayo, Duflot, Thomas, Garcia, Leyla, Gesing, Sandra, Gonzalez-Beltran, Alejandra, Gururaj, Anupama, Harrower, Natalie, Lin, Dawei, Medeiros, Claudia, Méndez, Eva, Meyers, Natalie, Mietchen, Daniel, Nagrani, Rajini, Nilsonne, Gustav, Parker, Simon, Pickering, Brian, Pienta, Amy, Polydoratou, Panayiota, Psomopoulos, Fotis, Rennes, Stephanie, Rowe, Robyn, Sansone, Susanna-Assunta, Shanahan, Hugh, Sitz, Lina, Stocks, Joanne, Tovani-Palone, Marcos Roberto, Uhlmansiek, Mary

“…The systemic challenges of the COVID-19 pandemic require cross-disciplinary collaboration in a global and timely fashion. Such collaboration needs open…”
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Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group by Austin, Claire C., Bernier, Alexander, Bezuidenhout, Louise, Bicarregui, Juan, Biro, Timea, Cambon-Thomsen, Anne, Carroll, Stephanie Russo, Cournia, Zoe, Dabrowski, Piotr Wojciech, Diallo, Gayo, Duflot, Thomas, Garcia, Leyla, Gesing, Sandra, Gonzalez-Beltran, Alejandra, Gururaj, Anupama, Harrower, Natalie, Lin, Dawei, Medeiros, Claudia, Méndez, Eva, Meyers, Natalie, Mietchen, Daniel, Nagrani, Rajini, Nilsonne, Gustav, Parker, Simon, Pickering, Brian, Pienta, Amy, Polydoratou, Panayiota, Psomopoulos, Fotis, Rennes, Stephanie, Rowe, Robyn, Sansone, Susanna-Assunta, Shanahan, Hugh, Sitz, Lina, Stocks, Joanne, Tovani-Palone, Marcos Roberto, Uhlmansiek, Mary

“…The systemic challenges of the COVID-19 pandemic require cross-disciplinary collaboration in a global and timely fashion. Such collaboration needs open…”
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Comparative Genomic Analysis of Two Novel Sporadic Shiga Toxin-Producing Escherichia coli O104:H4 Strains Isolated 2011 in Germany: e0122074 by Tietze, Erhard, Dabrowski, Piotr Wojciech, Prager, Rita, Radonic, Aleksandar, Fruth, Angelika, Auras, Philipp, Nitsche, Andreas, Mielke, Martin, Flieger, Antje

“…A large outbreak of gastrointestinal disease occurred in 2011 in Germany which resulted in almost 4000 patients with acute gastroenteritis or hemorrhagic…”
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Verbesserte Auswertung viraler Next Generation Sequencing-Daten am Beispiel von Kuhpockenviren by Dąbrowski, Piotr Wojciech

“…Die rasante Entwicklung des Next Generation Sequencing (NGS) erlaubt es, riesige Datenmengen innerhalb kürzester Zeit zu generieren – ein MiSeq der Firma…”
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