Search Results - "DU, LINH"

The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets by Beale, Holly C, Roger, Jacquelyn M, Cattle, Matthew A, McKay, Liam T, Thompson, Drew K A, Learned, Katrina, Lyle, A Geoffrey, Kephart, Ellen T, Currie, Rob, Lam, Du Linh, Sanders, Lauren, Pfeil, Jacob, Vivian, John, Bjork, Isabel, Salama, Sofie R, Haussler, David, Vaske, Olena M

“…Abstract Background The reproducibility of gene expression measured by RNA sequencing (RNA-Seq) is dependent on the sequencing depth. While unmapped or…”
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A hyperactive transposase of the maize transposable element activator (Ac) by Lazarow, Katina, Du, My-Linh, Weimer, Ruth, Kunze, Reinhard

“…Activator/Dissociation (Ac/Ds) transposable elements from maize are widely used as insertional mutagenesis and gene isolation tools in plants and more recently…”
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Familiarity leads to female mate preference for novel males in the guppy, Poecilia reticulata by HUGHES, KIMBERLY A., DU, LINH, RODD, F.HELEN, REZNICK, DAVID N.

“…Guppies are a model vertebrate for studies of sexual selection and life history evolution. None the less, there have been few investigations of the factors…”
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The Discovery of Novel, Structurally Diverse Protein Kinase C Agonists through Computer 3D-Database Pharmacophore Search. Molecular Modeling Studies by Wang, Shaomeng, Zaharevitz, Daniel W, Sharma, Rajiv, Marquez, Victor E, Lewin, Nancy E, Du, Linh, Blumberg, Peter M, Milne, G. W. A

“…A computer protein kinase C (PK-C) pharmacophore search on 206,876 nonproprietary structures in the NCI 3D-database led to the discovery of five compounds…”
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The bryostatins inhibit growth of B16/F10 melanoma cells in vitro through a protein kinase C-independent mechanism : Dissociation of activities using 26-epi-bryostatin 1 by SZALLASI, Z, LINH DU, LEVINE, R, LEWIN, N. E, PHI NGA NGUYEN, WILLIAMS, M. D, PETIT, G. R, BLUMBERG, P. M

“…Bryostatin 1 is a potential cancer chemotherapeutic agent in Phase II clinical trials, with positive responses observed for malignant melanoma, among other…”
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Abstract 5464: Determining accuracy of RNA sequencing data for gene expression profiling of single samples by Beale, Holly C., Roger, Jacquelyn M., Cattle, Matthew A., McKay, Liam T., Learned, Katrina, Lyle, Geoff, Kephart, Ellen T., Currie, Rob, Lam, Du Linh, Sanders, Lauren, Pfeil, Jacob, Vivian, John, Bjork, Isabel, Salama, Sofie R., Haussler, David, Vaske, Olena M.

“…Abstract Gene expression analysis of single samples shows increasing promise for clinical applications. However, obtaining high quality RNA from a human tumor…”
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Abstract 4890: A pan-cancer analysis framework for incorporating gene expression information into clinical interpretation of pediatric cancer genomic data by Morozova, Olena, Newton, Yulia, Shah, Avanthi Tayi, Beale, Holly, Lam, Du Linh, Vivian, John, Bjork, Isabel, Goldstein, Theodore, Stuart, Josh, Salama, Sofie, Sweet-Cordero, E. Alejandro, Haussler, David

“…Abstract Genomic characterization used in pediatric cancer clinical trials is limited to the detection of somatic mutations and gene fusions in…”
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Abstract LB-338: A critical evaluation of genomic data sharing: Barriers to accessing pediatric cancer genomic datasets: a Treehouse Childhood Cancer Initiative experience by Learned, Katrina, Durbin, Ann, Currie, Robert, Beale, Holly, Lam, Du Linh, Goldstein, Theodore, Salama, Sofie R., Haussler, David, Morozova, Olena, Bjork, Isabel

“…Abstract Genomic data sharing is increasingly recognized as critical to genomic research. The need is acute in pediatric cancer research due to the rarity of…”
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Abstract 2466: Identifying confidently measured genes in single pediatric cancer patient samples using RNA sequencing by Beale, Holly, Lam, Du Linh, Vivian, John, Newton, Yulia, Shah, Avanthi Tayi, Bjork, Isabel, Goldstein, Ted, Brooks, Angela N., Stuart, Josh, Salama, Sofie, Sweet-Cordero, E. Alejandro, Haussler1, David, Morozova, Olena

“…Abstract In the UC Santa Cruz Treehouse Childhood Cancer Initiative (treehousegenomics.soe.ucsc.edu), we are exploring the utility of using RNA-Seq analysis of…”
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Resiniferatoxin-amide and analogues as ligands for protein kinase C and vanilloid receptors and determination of their biological activities as vanilloids by Acs, G, Lee, J, Marquez, V E, Wang, S, Milne, G W, Du, L, Lewin, N E, Blumberg, P M

“…The naturally occurring diterpene resiniferatoxin (RTX) is an ultrapotent analogue of capsaicin. Acting on polymodal afferent neurons, RTX induces a generally…”
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Effect of Alteration of the Heterocyclic Nucleus of Indolactam V on Its Isoform Selectivity for PKC. Palladium-Catalyzed Route to Benzofuran Analogs of ILV by Kozikowski, Alan P, Ma, Dawei, Du, Linh, Lewin, Nancy E, Blumberg, Peter M

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Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor by Sanders, Lauren M, Rangaswami, Arun, Bjork, Isabel, Lam, Du Linh, Beale, Holly C, Kephart, Ellen Towle, Durbin, Ann, Learned, Katrina, Currie, Rob, Lyle, A Geoffrey, Pfeil, Jacob, Shah, Avanthi Tayi, Lee, Alex G, Leung, Stanley G, Behroozfard, Inge H, Breese, Marcus R, Peralez, Jennifer, Hazard, Florette K, Lacayo, Norman, Spunt, Sheri L, Haussler, David, Salama, Sofie R, Sweet-Cordero, E Alejandro, Vaske, Olena M

“…Gliomatosis peritonei is a rare pathologic finding that is associated with ovarian teratomas and malignant mixed germ cell tumors. The occurrence of…”
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A palladium catalyzed route to a benzofuran analogue of idolactam V (ILV): Effects on PKC isotype selectivity by Kozikowski, A. P., Ma, D., Du, Linh, Lewin, N. E., Blumberg, P. M.

“…Abstract…”
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