Search Results - "Cullen, Dan"

Copper radical oxidases and related extracellular oxidoreductases of wood-decay Agaricomycetes by Kersten, Phil, Cullen, Dan

“…•The importance of peroxide in white- and brown-rot wood decay is reviewed.•Characterizations of glyoxal oxidase, a peroxide-producing enzyme, support a role…”
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Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi by Riley, Robert, Salamov, Asaf A., Brown, Daren W., Nagy, Laszlo G., Floudas, Dimitrios, Held, Benjamin W., Levasseur, Anthony, Lombard, Vincent, Morin, Emmanuelle, Otillar, Robert, Lindquist, Erika A., Sun, Hui, LaButti, Kurt M., Schmutz, Jeremy, Jabbour, Dina, Luoi, Hong, Baker, Scott E., Pisabarro, Antonio G., Walton, Jonathan D., Blanchette, Robert A., Henrissat, Bernard, Martin, Francis, Cullen, Dan, Hibbett, David S., Grigoriev, Igor V.

“…Basidiomycota (basidiomycetes) make up 32% of the described fungi and include most wood-decaying species, as well as pathogens and mutualistic symbionts…”
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Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution by Nagy, László G, Riley, Robert, Bergmann, Philip J, Krizsán, Krisztina, Martin, Francis M, Grigoriev, Igor V, Cullen, Dan, Hibbett, David S

“…Fungal decomposition of plant cell walls (PCW) is a complex process that has diverse industrial applications and huge impacts on the carbon cycle. White rot…”
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Transcriptome and Secretome Analyses of Phanerochaete chrysosporium Reveal Complex Patterns of Gene Expression by Vanden Wymelenberg, Amber, Gaskell, Jill, Mozuch, Mike, Kersten, Phil, Sabat, Grzegorz, Martinez, Diego, Cullen, Dan

“…The wood decay basidiomycete Phanerochaete chrysosporium was grown under standard ligninolytic or cellulolytic conditions and subjected to whole-genome…”
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Comparative Transcriptome and Secretome Analysis of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium by Vanden Wymelenberg, Amber, Gaskell, Jill, Mozuch, Michael, Sabat, Grzegorz, Ralph, John, Skyba, Oleksandr, Mansfield, Shawn D, Blanchette, Robert A, Martinez, Diego, Grigoriev, Igor, Kersten, Philip J, Cullen, Dan

“…Cellulose degradation by brown rot fungi, such as Postia placenta, is poorly understood relative to the phylogenetically related white rot basidiomycete,…”
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Regulation of Gene Expression during the Onset of Ligninolytic Oxidation by Phanerochaete chrysosporium on Spruce Wood by Korripally, Premsagar, Hunt, Christopher G, Houtman, Carl J, Jones, Don C, Kitin, Peter J, Cullen, Dan, Hammel, Kenneth E

“…Since uncertainty remains about how white rot fungi oxidize and degrade lignin in wood, it would be useful to monitor changes in fungal gene expression during…”
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Identifying transcription factors that reduce wood recalcitrance and improve enzymatic degradation of xylem cell wall in Populus by Hori, Chiaki, Takata, Naoki, Lam, Pui Ying, Tobimatsu, Yuki, Nagano, Soichiro, Mortimer, Jenny C., Cullen, Dan

“…Developing an efficient deconstruction step of woody biomass for biorefinery has been drawing considerable attention since its xylem cell walls display highly…”
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A comparative genomic analysis of the oxidative enzymes potentially involved in lignin degradation by Agaricus bisporus by Doddapaneni, Harshavardhan, Subramanian, Venkataramanan, Fu, Bolei, Cullen, Dan

“…•We present a comparative genomic analysis of the oxidative enzymes in Agaricus bisporus.•Oxidative enzyme diversity is consistent with A. bisporus…”
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Significant Alteration of Gene Expression in Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium by Plant Species by Vanden Wymelenberg, Amber, Gaskell, Jill, Mozuch, Michael, BonDurant, Sandra Splinter, Sabat, Grzegorz, Ralph, John, Skyba, Oleksandr, Mansfield, Shawn D, Blanchette, Robert A, Grigoriev, Igor V, Kersten, Philip J, Cullen, Dan

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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Influence of Populus genotype on gene expression by the wood decay fungus Phanerochaete chrysosporium by Gaskell, Jill, Marty, Amber, Mozuch, Michael, Kersten, Philip J, Splinter BonDurant, Sandra, Sabat, Grzegorz, Azarpira, Ali, Ralph, John, Skyba, Oleksandr, Mansfield, Shawn D, Blanchette, Robert A, Cullen, Dan

“…We examined gene expression patterns in the lignin-degrading fungus Phanerochaete chrysosporium when it colonizes hybrid poplar (Populus alba × tremula) and…”
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Transcriptomics of Temporal- versus Substrate-Specific Wood Decay in the Brown-Rot Fungus Fibroporia radiculosa by Min, Byoungnam, Ahrendt, Steven, Lipzen, Anna, Toapanta, Cristina E., Blanchette, Robert A., Cullen, Dan, Hibbett, David S., Grigoriev, Igor V.

“…Brown-rot fungi lack many enzymes associated with complete wood degradation, such as lignin-attacking peroxidases, and have developed alternative mechanisms…”
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Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identification of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins by Wymelenberg, Amber Vanden, Minges, Patrick, Sabat, Grzegorz, Martinez, Diego, Aerts, Andrea, Salamov, Asaf, Grigoriev, Igor, Shapiro, Harris, Putnam, Nik, Belinky, Paula, Dosoretz, Carlos, Gaskell, Jill, Kersten, Phil, Cullen, Dan

“…The white-rot basidiomycete Phanerochaete chrysosporium employs extracellular enzymes to completely degrade the major polymers of wood: cellulose,…”
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Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78 by MARTINEZ, Diego, LARRONDO, Luis F, COUTINHO, Pedro M, HENRISSAT, Bernard, BERKA, Randy, CULLEN, Dan, ROKHSAR, Daniel, PUTNAM, Nik, SOLLEWIJN GELPKE, Maarten D, HUANG, Katherine, CHAPMAN, Jarrod, HELFENBEIN, Kevin G, RAMAIYA, Preethi, DETTER, J. Chris, LARIMER, Frank

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Structure, Organization, and Transcriptional Regulation of a Family of Copper Radical Oxidase Genes in the Lignin-Degrading Basidiomycete Phanerochaete chrysosporium by VANDEN WYMELENBERG, Amber, SABAT, Grzegorz, MOZUCH, Michael, KERSTEN, Philip J, CULLEN, Dan, BLANCHETTE, Robert A

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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The Phanerochaete chrysosporium secretome: Database predictions and initial mass spectrometry peptide identifications in cellulose-grown medium by Wymelenberg, Amber Vanden, Sabat, Grzegorz, Martinez, Diego, Rajangam, Alex S., Teeri, Tuula T., Gaskell, Jill, Kersten, Philip J., Cullen, Dan

“…The white rot basidiomycete, Phanerochaete chrysosporium, employs an array of extracellular enzymes to completely degrade the major polymers of wood:…”
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Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12 by Gaskell, Jill, Kersten, Phil, Larrondo, Luis F., Canessa, Paulo, Martinez, Diego, Hibbett, David, Schmoll, Monika, Kubicek, Christian P., Martinez, Angel T., Yadav, Jagjit, Master, Emma, Magnuson, Jon Karl, Yaver, Debbie, Berka, Randy, Lail, Kathleen, Chen, Cindy, LaButti, Kurt, Nolan, Matt, Lipzen, Anna, Aerts, Andrea, Riley, Robert, Barry, Kerrie, Henrissat, Bernard, Blanchette, Robert, Grigoriev, Igor V., Cullen, Dan

“…We report the genome of Postia (Rhodonia) placenta MAD-SB12, a homokaryotic wood decay fungus (Basidiomycota, Polyporales). Intensively studied as a…”
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Heterologous expression of laccase cDNA from Ceriporiopsis subvermispora yields copper-activated apoprotein and complex isoform patterns by Larrondo, Luis F, Avila, Marcela, Salas, Loreto, Cullen, Dan, Vicuna, Rafael

“…1 Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile and Instituto Milenio de…”
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Characterization of a multicopper oxidase gene cluster in Phanerochaete chrysosporium and evidence of altered splicing of the mco transcripts by Larrondo, Luis F, Gonzalez, Bernardo, Cullen, Dan, Vicuna, Rafael

“…1 Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile and Instituto…”
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Structure and transcriptional impact of divergent repetitive elements inserted within Phanerochaete chrysosporium strain RP-78 genes by Larrondo, Luis F, Canessa, Paulo, Vicuña, Rafael, Stewart, Philip, Vanden Wymelenberg, Amber, Cullen, Dan

“…We describe the structure, organization, and transcriptional impact of repetitive elements within the lignin-degrading basidiomycete, Phanerochaete…”
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Extracellular oxidative systems of the lignin-degrading Basidiomycete Phanerochaete chrysosporium by Kersten, Phil, Cullen, Dan

“…The US Department of Energy has assembled a high quality draft genome of Phanerochaete chrysosporium, a white rot Basidiomycete capable of completely degrading…”
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