Search Results - "Crisp, Peter"

Learning the Languages of the Chloroplast: Retrograde Signaling and Beyond by Chan, Kai Xun, Phua, Su Yin, Crisp, Peter, McQuinn, Ryan, Pogson, Barry J

“…The chloroplast can act as an environmental sensor, communicating with the cell during biogenesis and operation to change the expression of thousands of…”
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The Arabidopsis DNA Methylome Is Stable under Transgenerational Drought Stress by Ganguly, Diep R., Crisp, Peter A., Eichten, Steven R., Pogson, Barry J.

“…Improving the responsiveness, acclimation, and memory of plants to abiotic stress holds substantive potential for improving agriculture. An unresolved question…”
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Epigenetic features drastically impact CRISPR–Cas9 efficacy in plants by Weiss, Trevor, Crisp, Peter A, Rai, Krishan M, Song, Meredith, Springer, Nathan M, Zhang, Feng

“…Abstract CRISPR–Cas9-mediated genome editing has been widely adopted for basic and applied biological research in eukaryotic systems. While many studies…”
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Monitoring the interplay between transposable element families and DNA methylation in maize by Noshay, Jaclyn M, Anderson, Sarah N, Zhou, Peng, Ji, Lexiang, Ricci, William, Lu, Zefu, Stitzer, Michelle C, Crisp, Peter A, Hirsch, Candice N, Zhang, Xiaoyu, Schmitz, Robert J, Springer, Nathan M

“…DNA methylation and epigenetic silencing play important roles in the regulation of transposable elements (TEs) in many eukaryotic genomes. A majority of the…”
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Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics by Crisp, Peter A, Ganguly, Diep, Eichten, Steven R, Borevitz, Justin O, Pogson, Barry J

“…Plants grow in dynamic environments where they can be exposed to a multitude of stressful factors, all of which affect their development, yield, and,…”
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Population-level analysis reveals the widespread occurrence and phenotypic consequence of DNA methylation variation not tagged by genetic variation in maize by Xu, Jing, Chen, Guo, Hermanson, Peter J, Xu, Qiang, Sun, Changshuo, Chen, Wenqing, Kan, Qiuxin, Li, Minqi, Crisp, Peter A, Yan, Jianbing, Li, Lin, Springer, Nathan M, Li, Qing

“…DNA methylation can provide a source of heritable information that is sometimes entirely uncoupled from genetic variation. However, the extent of this…”
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Uncoupling High Light Responses from Singlet Oxygen Retrograde Signaling and Spatial-Temporal Systemic Acquired Acclimation by Carmody, Melanie, Crisp, Peter A., d'Alessandro, Stefano, Ganguly, Diep, Gordon, Matthew, Havaux, Michel, Albrecht-Borth, Verónica, Pogson, Barry J.

“…Distinct ROS signaling pathways initiated by singlet oxygen (¹O₂) or superoxide and hydrogen peroxide have been attributed to either cell death or acclimation,…”
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Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes by Crisp, Peter A., Marand, Alexandre P., Noshay, Jaclyn M., Zhou, Peng, Lu, Zefu, Schmitz, Robert J., Springer, Nathan M.

“…The genomic sequences of crops continue to be produced at a frenetic pace. It remains challenging to develop complete annotations of functional genes and…”
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Heritable Epigenomic Changes to the Maize Methylome Resulting from Tissue Culture by Han, Zhaoxue, Crisp, Peter A, Stelpflug, Scott, Kaeppler, Shawn M, Li, Qing, Springer, Nathan M

“…DNA methylation can contribute to the maintenance of genome integrity and regulation of gene expression. In most situations, DNA methylation patterns are…”
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Decoding the sorghum methylome: understanding epigenetic contributions to agronomic traits by Vafadarshamasbi, Ulduz, Mace, Emma, Jordan, David, Crisp, Peter A

“…DNA methylation is a chromatin modification that plays an essential role in regulating gene expression and genome stability and it is typically associated with…”
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Optimization of multiplexed CRISPR/Cas9 system for highly efficient genome editing in Setaria viridis by Weiss, Trevor, Wang, Chunfang, Kang, Xiaojun, Zhao, Hui, Elena Gamo, Maria, Starker, Colby G., Crisp, Peter A., Zhou, Peng, Springer, Nathan M., Voytas, Daniel F., Zhang, Feng

“…SUMMARY In recent years, Setaria viridis has been developed as a model plant to better understand the C4 photosynthetic pathway in major crops. With the…”
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Prediction of conserved and variable heat and cold stress response in maize using cis-regulatory information by Zhou, Peng, Enders, Tara A, Myers, Zachary A, Magnusson, Erika, Crisp, Peter A, Noshay, Jaclyn M, Gomez-Cano, Fabio, Liang, Zhikai, Grotewold, Erich, Greenham, Kathleen, Springer, Nathan M

“…Changes in gene expression are important for responses to abiotic stress. Transcriptome profiling of heat- or cold-stressed maize genotypes identifies many…”
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Evidence for a SAL1-PAP Chloroplast Retrograde Pathway That Functions in Drought and High Light Signaling in Arabidopsis by Estavillo, Gonzalo M., Crisp, Peter A., Pornsiriwong, Wannarat, Wirtz, Markus, Collinge, Derek, Carrie, Chris, Giraud, Estelle, Whelan, James, David, Pascale, Javot, Hélène, Brearley, Charles, Hell, Rüdiger, Marin, Elena, Pogson, Barry J.

“…Compartmentation of the eukaryotic cell requires a complex set of subcellular messages, including multiple retrograde signals from the chloroplast and…”
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Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light by Jung, Hou-Sung, Crisp, Peter A., Estavillo, Gonzalo M., Cole, Benjamin, Hong, Fangxin, Mockler, Todd C., Pogson, Barry J., Chory, Joanne

“…Sunlight provides energy for photosynthesis and is essential for nearly all life on earth. However, too much or too little light or rapidly fluctuating light…”
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Rapid Recovery Gene Downregulation during Excess-Light Stress and Recovery in Arabidopsis by Crisp, Peter A, Ganguly, Diep R, Smith, Aaron B, Murray, Kevin D, Estavillo, Gonzalo M, Searle, Iain, Ford, Ethan, Bogdanović, Ozren, Lister, Ryan, Borevitz, Justin O, Eichten, Steven R, Pogson, Barry J

“…Stress recovery may prove to be a promising approach to increase plant performance and, theoretically, mRNA instability may facilitate faster recovery…”
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Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions[OPEN] by Zhou, Peng, Li, Zhi, Magnusson, Erika, Gomez Cano, Fabio, Crisp, Peter A., Noshay, Jaclyn M., Grotewold, Erich, Hirsch, Candice N., Briggs, Steven P., Springer, Nathan M.

“…The generation of gene regulatory networks from thousands of maize transcriptome data sets identifies putative transcription factor targets and candidate…”
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Genetic and epigenetic variation in transposable element expression responses to abiotic stress in maize by Liang, Zhikai, Anderson, Sarah N, Noshay, Jaclyn M, Crisp, Peter A, Enders, Tara A, Springer, Nathan M

“…Transposable elements (TEs) pervade most eukaryotic genomes. The repetitive nature of TEs complicates the analysis of their expression. Evaluation of the…”
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Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation by Smith, Aaron B., Ganguly, Diep R., Moore, Marten, Bowerman, Andrew F., Janapala, Yoshika, Shirokikh, Nikolay E., Pogson, Barry J., Crisp, Peter A.

“…SUMMARY Transcript stability is an important determinant of its abundance and, consequently, translational output. Transcript destabilisation can be rapid and…”
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Maintenance of pre‐existing DNA methylation states through recurring excess‐light stress by Ganguly, Diep R., Crisp, Peter A., Eichten, Steven R., Pogson, Barry J.

“…The capacity for plant stress priming and memory and the notion of this being underpinned by DNA methylation‐mediated memory is an appealing hypothesis for…”
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Beyond the gene: epigenetic and cis-regulatory targets offer new breeding potential for the future by Crisp, Peter A, Bhatnagar-Mathur, Pooja, Hundleby, Penny, Godwin, Ian D, Waterhouse, Peter M, Hickey, Lee T

“…[Display omitted] •Factors beyond the coding sequence of genes contribute to trait variation in crops.•Non-genic factors include epigenetic modifications and…”
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