Search Results - "Cox, Murray"

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data by Cox, Murray P, Peterson, Daniel A, Biggs, Patrick J

“…Illumina's second-generation sequencing platform is playing an increasingly prominent role in modern DNA and RNA sequencing efforts. However, rapid, simple,…”
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Multiple Deeply Divergent Denisovan Ancestries in Papuans by Jacobs, Guy S., Hudjashov, Georgi, Saag, Lauri, Kusuma, Pradiptajati, Darusallam, Chelzie C., Lawson, Daniel J., Mondal, Mayukh, Pagani, Luca, Ricaut, François-Xavier, Stoneking, Mark, Metspalu, Mait, Sudoyo, Herawati, Lansing, J. Stephen, Cox, Murray P.

“…Genome sequences are known for two archaic hominins—Neanderthals and Denisovans—which interbred with anatomically modern humans as they dispersed out of…”
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Comparative genomics reveals a core gene toolbox for lifestyle transitions in Hypocreales fungi by Wu, Baojun, Cox, Murray P.

“…Summary Fungi have evolved diverse lifestyles and adopted pivotal new roles in both natural ecosystems and human environments. However, the molecular…”
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Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae by Winter, David J, Ganley, Austen R D, Young, Carolyn A, Liachko, Ivan, Schardl, Christopher L, Dupont, Pierre-Yves, Berry, Daniel, Ram, Arvina, Scott, Barry, Cox, Murray P

“…Structural features of genomes, including the three-dimensional arrangement of DNA in the nucleus, are increasingly seen as key contributors to the regulation…”
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Tradition and change: celebrating food systems resilience at two Indigenous Māori community events by Wehi, Priscilla, Cox, Murray, Whaanga, Hēmi, Roa, Tom

“…Cultural wellbeing and resilience are of key importance in many Indigenous communities impacted by colonization processes. Reciprocity and the sharing of an…”
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Fungal endophyte infection of ryegrass reprograms host metabolism and alters development by Dupont, Pierre‐Yves, Eaton, Carla J, Wargent, Jason J, Fechtner, Susanne, Solomon, Peter, Schmid, Jan, Day, Robert C, Scott, Barry, Cox, Murray P

“…Beneficial associations between plants and microbes play an important role in both natural and agricultural ecosystems. For example, associations between fungi…”
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Greater genetic and regulatory plasticity of retained duplicates in Epichloë endophytic fungi by Wu, Baojun, Cox, Murray P.

“…Gene duplicates can act as a source of genetic material from which new functions arise. Most duplicated genes revert to single copy genes and only a small…”
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Woven languages: understanding Indigenous socioecological systems by Wehi, Priscilla M., Whaanga, Hēmi, Roa, Tom, Cox, Murray P.

“…Language connects cultural and biological diversity and can contribute to both big data and localised approaches to improve conservation. Analysing Indigenous…”
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Denisovan introgression has shaped the immune system of present-day Papuans by Vespasiani, Davide M, Jacobs, Guy S, Cook, Laura E, Brucato, Nicolas, Leavesley, Matthew, Kinipi, Christopher, Ricaut, François-Xavier, Cox, Murray P, Gallego Romero, Irene

“…Modern humans have admixed with multiple archaic hominins. Papuans, in particular, owe up to 5% of their genome to Denisovans, a sister group to Neanderthals…”
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Reconstruction of gene innovation associated with major evolutionary transitions in the kingdom Fungi by Wu, Baojun, Hao, Weilong, Cox, Murray P

“…Fungi exhibit astonishing diversity with multiple major phenotypic transitions over the kingdom's evolutionary history. As part of this process, fungi…”
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Papuan mitochondrial genomes and the settlement of Sahul by Pedro, Nicole, Brucato, Nicolas, Fernandes, Veronica, André, Mathilde, Saag, Lauri, Pomat, William, Besse, Céline, Boland, Anne, Deleuze, Jean-François, Clarkson, Chris, Sudoyo, Herawati, Metspalu, Mait, Stoneking, Mark, Cox, Murray P, Leavesley, Matthew, Pereira, Luisa, Ricaut, François-Xavier

“…New Guineans represent one of the oldest locally continuous populations outside Africa, harboring among the greatest linguistic and genetic diversity on the…”
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Archaic mitochondrial DNA inserts in modern day nuclear genomes by Bücking, Robert, Cox, Murray P, Hudjashov, Georgi, Saag, Lauri, Sudoyo, Herawati, Stoneking, Mark

“…Traces of interbreeding of Neanderthals and Denisovans with modern humans in the form of archaic DNA have been detected in the genomes of present-day human…”
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Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages by Karmin, Monika, Flores, Rodrigo, Saag, Lauri, Hudjashov, Georgi, Brucato, Nicolas, Crenna-Darusallam, Chelzie, Larena, Maximilian, Endicott, Phillip L, Jakobsson, Mattias, Lansing, J Stephen, Sudoyo, Herawati, Leavesley, Matthew, Metspalu, Mait, Ricaut, François-Xavier, Cox, Murray P

“…Abstract Island Southeast Asia (ISEA) and Oceania host one of the world’s richest assemblages of human phenotypic, linguistic, and cultural diversity. Despite…”
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Malagasy Genetic Ancestry Comes from an Historical Malay Trading Post in Southeast Borneo by Brucato, Nicolas, Kusuma, Pradiptajati, Cox, Murray P, Pierron, Denis, Purnomo, Gludhug A, Adelaar, Alexander, Kivisild, Toomas, Letellier, Thierry, Sudoyo, Herawati, Ricaut, François-Xavier

“…Malagasy genetic diversity results from an exceptional protoglobalization process that took place over a thousand years ago across the Indian Ocean. Previous…”
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Breaking Free: The Genomics of Allopolyploidy-Facilitated Niche Expansion in White Clover by Griffiths, Andrew G, Moraga, Roger, Tausen, Marni, Gupta, Vikas, Bilton, Timothy P, Campbell, Matthew A, Ashby, Rachael, Nagy, Istvan, Khan, Anar, Larking, Anna, Anderson, Craig, Franzmayr, Benjamin, Hancock, Kerry, Scott, Alicia, Ellison, Nick W, Cox, Murray P, Asp, Torben, Mailund, Thomas, Schierup, Mikkel H, Andersen, Stig Uggerhøj

“…The merging of distinct genomes, allopolyploidization, is a widespread phenomenon in plants. It generates adaptive potential through increased genetic…”
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Complex Patterns of Admixture across the Indonesian Archipelago by Hudjashov, Georgi, Karafet, Tatiana M, Lawson, Daniel J, Downey, Sean, Savina, Olga, Sudoyo, Herawati, Lansing, J Stephen, Hammer, Michael F, Cox, Murray P

“…Indonesia, an island nation as large as continental Europe, hosts a sizeable proportion of global human diversity, yet remains surprisingly undercharacterized…”
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Genomic insights into the peopling of the Southwest Pacific by Skoglund, Pontus, Posth, Cosimo, Sirak, Kendra, Spriggs, Matthew, Valentin, Frederique, Bedford, Stuart, Clark, Geoffrey R., Reepmeyer, Christian, Petchey, Fiona, Fernandes, Daniel, Fu, Qiaomei, Harney, Eadaoin, Lipson, Mark, Mallick, Swapan, Novak, Mario, Rohland, Nadin, Stewardson, Kristin, Abdullah, Syafiq, Cox, Murray P., Friedlaender, Françoise R., Friedlaender, Jonathan S., Kivisild, Toomas, Koki, George, Kusuma, Pradiptajati, Merriwether, D. Andrew, Ricaut, Francois-X., Wee, Joseph T. S., Patterson, Nick, Krause, Johannes, Pinhasi, Ron, Reich, David

“…Analysis of ancient DNA from four individuals who lived in Vanuatu and Tonga between 2,300 and 3,100 years ago suggests that the Papuan ancestry seen in…”
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Deep ancestry of Bornean hunter-gatherers supports long-term local ancestry dynamics by Kusuma, Pradiptajati, Cox, Murray P., Barker, Graeme, Sudoyo, Herawati, Lansing, J. Stephen, Jacobs, Guy S.

“…Borneo was a crossroad of ancient dispersals, with some of the earliest Southeast Asian human remains and rock art. The island is home to traditionally…”
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Host Tissue Environment Directs Activities of an Epichloë Endophyte, While It Induces Systemic Hormone and Defense Responses in Its Native Perennial Ryegrass Host by Schmid, Jan, Day, Robert, Zhang, Ningxin, Dupont, Pierre-Yves, Cox, Murray P, Schardl, Christopher L, Minards, Niki, Truglio, Mauro, Moore, Neil, Harris, Daniel R, Zhou, Yanfei

“…Increased resilience of pasture grasses mediated by fungal Epichloë endophytes is crucial to pastoral industries. The underlying mechanisms are only partially…”
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The Venturia inaequalis effector repertoire is dominated by expanded families with predicted structural similarity, but unrelated sequence, to avirulence proteins from other plant-pathogenic fungi by Rocafort, Mercedes, Bowen, Joanna K, Hassing, Berit, Cox, Murray P, McGreal, Brogan, de la Rosa, Silvia, Plummer, Kim M, Bradshaw, Rosie E, Mesarich, Carl H

“…Scab, caused by the biotrophic fungus Venturia inaequalis, is the most economically important disease of apples worldwide. During infection, V. inaequalis…”
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