Search Results - "Cotten, Matthew"

Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study by Cotten, Matthew, PhD, Watson, Simon J, PhD, Kellam, Paul, Prof, Al-Rabeeah, Abdullah A, FRCS, Makhdoom, Hatem Q, PhD, Assiri, Abdullah, MD, Al-Tawfiq, Jaffar A, MD, Alhakeem, Rafat F, MD, Madani, Hossam, PhD, AlRabiah, Fahad A, MD, Hajjar, Sami Al, MD, Al-nassir, Wafa N, MD, Albarrak, Ali, MD, Flemban, Hesham, MD, Balkhy, Hanan H, MD, Alsubaie, Sarah, MD, Palser, Anne L, PhD, Gall, Astrid, Dr Med Vet, Bashford-Rogers, Rachael, MChem, Rambaut, Andrew, Prof, Zumla, Alimuddin I, Prof, Memish, Ziad A, Prof

“…Summary Background Since June, 2012, Middle East respiratory syndrome coronavirus (MERS-CoV) has, worldwide, caused 104 infections in people including 49…”
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Hospital Outbreak of Middle East Respiratory Syndrome Coronavirus by Assiri, Abdullah, McGeer, Allison, Perl, Trish M, Price, Connie S, Al Rabeeah, Abdullah A, Cummings, Derek A.T, Alabdullatif, Zaki N, Assad, Maher, Almulhim, Abdulmohsen, Makhdoom, Hatem, Madani, Hossam, Alhakeem, Rafat, Al-Tawfiq, Jaffar A, Cotten, Matthew, Watson, Simon J, Kellam, Paul, Zumla, Alimuddin I, Memish, Ziad A

“…A novel coronavirus (MERS-CoV) is causing severe disease in the Middle East. In this report on a hospital outbreak of MERS-CoV infection, 23 confirmed cases…”
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Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya by Kiyuka, Patience K, Agoti, Charles N, Munywoki, Patrick K, Njeru, Regina, Bett, Anne, Otieno, James R, Otieno, Grieven P, Kamau, Everlyn, Clark, Taane G, van der Hoek, Lia, Kellam, Paul, Nokes, D James, Cotten, Matthew

“…Abstract Background Human coronavirus NL63 (HCoV-NL63) is a globally endemic pathogen causing mild and severe respiratory tract infections with reinfections…”
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Human infection with MERS coronavirus after exposure to infected camels, Saudi Arabia, 2013 by Memish, Ziad A, Cotten, Matthew, Meyer, Benjamin, Watson, Simon J, Alsahafi, Abdullah J, Al Rabeeah, Abdullah A, Corman, Victor Max, Sieberg, Andrea, Makhdoom, Hatem Q, Assiri, Abdullah, Al Masri, Malaki, Aldabbagh, Souhaib, Bosch, Berend-Jan, Beer, Martin, Müller, Marcel A, Kellam, Paul, Drosten, Christian

“…We investigated a case of human infection with Middle East respiratory syndrome coronavirus (MERS-CoV) after exposure to infected camels. Analysis of the whole…”
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Entamoeba and Giardia parasites implicated as hosts of CRESS viruses by Kinsella, Cormac M., Bart, Aldert, Deijs, Martin, Broekhuizen, Patricia, Kaczorowska, Joanna, Jebbink, Maarten F., van Gool, Tom, Cotten, Matthew, van der Hoek, Lia

“…Metagenomic techniques have enabled genome sequencing of unknown viruses without isolation in cell culture, but information on the virus host is often lacking,…”
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Genome diversity of Epstein-Barr virus from multiple tumor types and normal infection by Palser, Anne L, Grayson, Nicholas E, White, Robert E, Corton, Craig, Correia, Samantha, Ba Abdullah, Mohammed M, Watson, Simon J, Cotten, Matthew, Arrand, John R, Murray, Paul G, Allday, Martin J, Rickinson, Alan B, Young, Lawrence S, Farrell, Paul J, Kellam, Paul

“…Epstein-Barr virus (EBV) infects most of the world's population and is causally associated with several human cancers, but little is known about how EBV…”
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Field evaluation of the performance of a SARS-CoV-2 antigen rapid diagnostic test in Uganda using nasopharyngeal samples by Nalumansi, Aminah, Lutalo, Tom, Kayiwa, John, Watera, Christine, Balinandi, Stephen, Kiconco, Jocelyn, Nakaseegu, Joweria, Olara, Denis, Odwilo, Emmanuel, Serwanga, Jennifer, Kikaire, Bernard, Ssemwanga, Deogratius, Nabadda, Susan, Ssewanyana, Isaac, Atwine, Diane, Mwebesa, Henry, Bosa, Henry Kyobe, Nsereko, Christopher, Cotten, Matthew, Downing, Robert, Lutwama, Julius, Kaleebu, Pontiano

“…•High global demand for SARS-CoV-2 testing to identify COVID-19 cases.•qRT-PCR recommended diagnostic test but constraints such as cost prevent its…”
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SARS-CoV-2 Omicron BA.5 Infections in Vaccinated Persons, Rural Uganda by Mugisha, Joseph, Mpairwe, Bernard, Newton, Robert, Cotten, Matthew, Phan, My V T

“…We describe a cluster of COVID-19 breakthrough infections after vaccination in Kyamulibwa, Kalungu District, Uganda. All but 1 infection were from SARS-CoV-2…”
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Molecular Epidemiology and Evolution of Influenza Viruses Circulating within European Swine between 2009 and 2013 by Watson, Simon J, Langat, Pinky, Reid, Scott M, Lam, Tommy Tsan-Yuk, Cotten, Matthew, Kelly, Michael, Van Reeth, Kristien, Qiu, Yu, Simon, Gaëlle, Bonin, Emilie, Foni, Emanuela, Chiapponi, Chiara, Larsen, Lars, Hjulsager, Charlotte, Markowska-Daniel, Iwona, Urbaniak, Kinga, Dürrwald, Ralf, Schlegel, Michael, Huovilainen, Anita, Davidson, Irit, Dán, Ádám, Loeffen, Willie, Edwards, Stephanie, Bublot, Michel, Vila, Thais, Maldonado, Jaime, Valls, Laura, Brown, Ian H, Pybus, Oliver G, Kellam, Paul

“…The emergence in humans of the A(H1N1)pdm09 influenza virus, a complex reassortant virus of swine origin, highlighted the importance of worldwide influenza…”
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Universal Amplification, Next-Generation Sequencing, and Assembly of HIV-1 Genomes by GALL, Astrid, FERNS, Bridget, MORRIS, Clare, WATSON, Simon, COTTEN, Matthew, ROBINSON, Mark, BERRY, Neil, PILLAY, Deenan, KELLAM, Paul

“…OA  Article Usage Stats Services JCM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+…”
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Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing by Agoti, Charles N, Otieno, James R, Munywoki, Patrick K, Mwihuri, Alexander G, Cane, Patricia A, Nokes, D James, Kellam, Paul, Cotten, Matthew

“…Human respiratory syncytial virus (RSV) is associated with severe childhood respiratory infections. A clear description of local RSV molecular epidemiology,…”
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Evolution of increased positive charge on the SARS-CoV-2 spike protein may be adaptation to human transmission by Cotten, Matthew, Phan, My V.T.

“…The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) continues to evolve and infect individuals. The exterior surface of the SARS-CoV-2 virion is…”
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Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting by Cotten, Matthew, Petrova, Velislava, Phan, My V T, Rabaa, Maia A, Watson, Simon J, Ong, Swee Hoe, Kellam, Paul, Baker, Stephen

“…Norovirus is a highly transmissible infectious agent that causes epidemic gastroenteritis in susceptible children and adults. Norovirus infections can be…”
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Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirus by Cotten, Matthew, Lam, Tommy T, Watson, Simon J, Palser, Anne L, Petrova, Velislava, Grant, Paul, Pybus, Oliver G, Rambaut, Andrew, Guan, Yi, Pillay, Deenan, Kellam, Paul, Nastouli, Eleni

“…A novel betacoronavirus associated with lethal respiratory and renal complications was recently identified in patients from several countries in the Middle…”
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Main Routes of Entry and Genomic Diversity of SARS-CoV-2, Uganda by Bugembe, Daniel Lule, Kayiwa, John, Phan, My V T, Tushabe, Phiona, Balinandi, Stephen, Dhaala, Beatrice, Lexow, Jonas, Mwebesa, Henry, Aceng, Jane, Kyobe, Henry, Ssemwanga, Deogratius, Lutwama, Julius, Kaleebu, Pontiano, Cotten, Matthew

“…We established rapid local viral sequencing to document the genomic diversity of severe acute respiratory syndrome coronavirus 2 entering Uganda. Virus…”
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Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules by Lamb, Kieran D, Luka, Martha M, Saathoff, Megan, Orton, Richard J, Phan, My V T, Cotten, Matthew, Yuan, Ke, Robertson, David L

“…The COVID-19 pandemic has been characterised by sequential variant-specific waves shaped by viral, individual human and population factors. SARS-CoV-2 variants…”
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Optimisation and Validation of a conventional ELISA and cut-offs for detecting and quantifying anti-SARS-CoV-2 Spike, RBD, and Nucleoprotein IgG, IgM, and IgA antibodies in Uganda by Oluka, Gerald Kevin, Namubiru, Patricia, Kato, Laban, Ankunda, Violet, Gombe, Ben, Cotten, Matthew, Musenero, Monica, Kaleebu, Pontiano, Fox, Julie, Serwanga, Jennifer

“…There is an urgent need for better immunoassays to measure antibody responses as part of immune-surveillance activities and to profile immunological responses…”
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Spread, circulation, and evolution of the Middle East respiratory syndrome coronavirus by Cotten, Matthew, Watson, Simon J, Zumla, Alimuddin I, Makhdoom, Hatem Q, Palser, Anne L, Ong, Swee Hoe, Al Rabeeah, Abdullah A, Alhakeem, Rafat F, Assiri, Abdullah, Al-Tawfiq, Jaffar A, Albarrak, Ali, Barry, Mazin, Shibl, Atef, Alrabiah, Fahad A, Hajjar, Sami, Balkhy, Hanan H, Flemban, Hesham, Rambaut, Andrew, Kellam, Paul, Memish, Ziad A

“…The Middle East respiratory syndrome coronavirus (MERS-CoV) was first documented in the Kingdom of Saudi Arabia (KSA) in 2012 and, to date, has been identified…”
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Field evaluation of the performance of seven Antigen Rapid diagnostic tests for the diagnosis of SARs-CoV-2 virus infection in Uganda by Bwogi, Josephine, Lutalo, Tom, Tushabe, Phionah, Bukenya, Henry, Eliku, James Peter, Ssewanyana, Isaac, Nabadda, Susan, Nsereko, Christopher, Cotten, Matthew, Downing, Robert, Lutwama, Julius, Kaleebu, Pontiano

“…The objective of this study was to evaluate the performance of seven antigen rapid diagnostic tests (Ag RDTs) in a clinical setting to identify those that…”
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Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm by Cotten, Matthew, Oude Munnink, Bas, Canuti, Marta, Deijs, Martin, Watson, Simon J, Kellam, Paul, van der Hoek, Lia

“…We have developed a full genome virus detection process that combines sensitive nucleic acid preparation optimised for virus identification in fecal material…”
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