Search Results - "Cooper, James B."

XSTREAM: a practical algorithm for identification and architecture modeling of tandem repeats in protein sequences by Newman, Aaron M, Cooper, James B

“…Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem…”
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AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number by Newman, Aaron M, Cooper, James B

“…Clustering the information content of large high-dimensional gene expression datasets has widespread application in "omics" biology. Unfortunately, the…”
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Efficient Selection of Biomineralizing DNA Aptamers Using Deep Sequencing and Population Clustering by Bawazer, Lukmaan A, Newman, Aaron M, Gu, Qian, Ibish, Abdullah, Arcila, Mary, Cooper, James B, Meldrum, Fiona C, Morse, Daniel E

“…DNA-based information systems drive the combinatorial optimization processes of natural evolution, including the evolution of biominerals. Advances in…”
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Global analysis of proline-rich tandem repeat proteins reveals broad phylogenetic diversity in plant secretomes by Newman, Aaron M, Cooper, James B

“…Cell walls, constructed by precisely choreographed changes in the plant secretome, play critical roles in plant cell physiology and development. Along with…”
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Lab-Specific Gene Expression Signatures in Pluripotent Stem Cells by Newman, Aaron M., Cooper, James B.

“…Pluripotent stem cells derived from both embryonic and reprogrammed somatic cells have significant potential for human regenerative medicine. Despite…”
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Systems-level analysis of age-related macular degeneration reveals global biomarkers and phenotype-specific functional networks by Newman, Aaron M, Gallo, Natasha B, Hancox, Lisa S, Miller, Norma J, Radeke, Carolyn M, Maloney, Michelle A, Cooper, James B, Hageman, Gregory S, Anderson, Don H, Johnson, Lincoln V, Radeke, Monte J

“…Please see related commentary: http://www.biomedcentral.com/1741-7015/10/21/abstract Age-related macular degeneration (AMD) is a leading cause of blindness…”
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PRPs localized to the middle lamellae are required for cortical tissue integrity in Medicago truncatula roots by Erickson, B. Joy, Staples, Nathan C., Hess, Nicole, Staples, Michelle A., Weissert, Christian, Finkelstein, Ruth R., Cooper, James B.

“…Key message A family of repetitive proline-rich proteins interact with acidic pectins and play distinct roles in legume root cell walls affecting cortical and…”
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Identifying stem cell gene expression patterns and phenotypic networks with AutoSOME by Newman, Aaron M, Cooper, James B

“…Stem cells have the unique property of differentiation and self-renewal and play critical roles in normal development, tissue repair, and disease. To promote…”
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NITZSCHIA OVALIS (BACILLARIOPHYCEAE) MONO LAKE STRAIN ACCUMULATES 1,4/2,5 CYCLOHEXANETETROL IN RESPONSE TO INCREASED SALINITY by Garza-Sánchez, Fernando, Chapman, David J, Cooper, James B

“…The growth of microalgae in hypersaline conditions requires that cells accumulate osmoprotectants. In many instances, these are polyols. We isolated the diatom…”
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Testing the expected utility maximization hypothesis with limited experimental data by Cooper, James B., Russell, Thomas, Samuelson, Paul A.

“…In this article we use some old ideas of Franklin to derive the partial differential equation (St Robert Equation) characterizing the level curves of expected…”
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Morphogenetic Rescue of Rhizobium meliloti Nodulation Mutants by trans-Zeatin Secretion by Cooper, James B., Long, Sharon R.

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Cross-Linking of Soluble Extensin in Isolated Cell Walls by Cooper, James B., Varner, Joseph E.

“…The extensin component of primary cell walls has generally been considered to be an intrinsically insoluble cell wall glycoprotein. Recent data have…”
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NITZSCHIA OVALIS (BACILLARIOPHYCEAE) MONO LAKE STRAIN ACCUMULATES 1,4/2,5 CYCLOHEXANETETROL IN RESPONSE TO INCREASED SALINITY 1 by Garza‐Sánchez, Fernando, Chapman, David J., Cooper, James B.

“…The growth of microalgae in hypersaline conditions requires that cells accumulate osmoprotectants. In many instances, these are polyols. We isolated the diatom…”
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NITZSCHIA OVALIS (BACILLARIOPHYCEAE) MONO LAKE STRAIN ACCUMULATES 1,4/2,5 CYCLOHEXANETETROL IN RESPONSE TO INCREASED SALINITY1 by Garza‐Sánchez, Fernando, Chapman, David J., Cooper, James B.

“…The growth of microalgae in hypersaline conditions requires that cells accumulate osmoprotectants. In many instances, these are polyols. We isolated the diatom…”
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A developmentally regulated hydroxyproline-rich glycoprotein from the cell walls of soybean seed coats by Cassab, G.I, Nieto-Sotelo, J, Cooper, J.B, Van Holst, G, Varner, J.E

“…In soybean seeds the level of hydroxyproline is regulated in a developmental and tissue-specific manner. The seed coat contains approximately 77% of the total…”
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Synthesis of fibrils in vitro by a solubilized cellulose synthase from Acetobacter xylinum by Lin, F.C, Brown, R.M. Jr, Cooper, J.B, Delmer, D.P

“…A digitonin-solubilized cellulose synthase was prepared from Acetobacter xylinum. When this enzyme was incubated under conditions known to lead to active…”
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Chlamydomonas agglutinin is a hydroxyproline-rich glycoprotein by Cooper, J.B, Adair, W.S, Mecham, R.P, Heuser, J.E, Goodenough, U.W

“…The mt+sexual agglutinin from Chlamydomonas reinhardi is shown to contain ≈ 12% hydroxyproline, and two inhibitors of hydroxyproline formation, α ,α′-dipyridyl…”
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Selective Inhibition of Proline Hydroxylation by 3,4-Dehydroproline by Cooper, James B., Varner, Joseph E.

“…The effect of proline analogs on peptidyl proline hydroxylation has been studied in vivo using aerated root slices of Daucus carota. One analog,…”
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Morphogenetic rescue of Rhizobium meliloti nodulation mutants by trans-zeatin secretion by Cooper, J.B, Long, S.R

“…The development of nitrogen-fixing nodules is induced on the roots of legume host plants by Rhizobium bacteria. We employed a novel strategy to probe the…”
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Reconstructing adiabats by Cooper, James B

“…We give an explicit method for calculating the equations of state of a thermodynamical substance from the following information: in the calibrated case, the…”
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