Search Results - "Cook, Peter"

Transcription-driven genome organization: a model for chromosome structure and the regulation of gene expression tested through simulations by Cook, Peter R, Marenduzzo, Davide

“…Abstract Current models for the folding of the human genome see a hierarchy stretching down from chromosome territories, through A/B compartments and…”
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Multiscale Spatial Organization of RNA Polymerase in Escherichia coli by Endesfelder, Ulrike, Finan, Kieran, Holden, Seamus J., Cook, Peter R., Kapanidis, Achillefs N., Heilemann, Mike

“…Nucleic acid synthesis is spatially organized in many organisms. In bacteria, however, the spatial distribution of transcription remains obscure, owing largely…”
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Exon Skipping Is Correlated with Exon Circularization by Kelly, Steven, Greenman, Chris, Cook, Peter R., Papantonis, Argyris

“…Circular RNAs are found in a wide range of organisms and it has been proposed that they perform disparate functions. However, how RNA circularization is…”
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A Model for all Genomes: The Role of Transcription Factories by Cook, Peter R.

“…A model for all genomes involving one major architectural motif is presented: DNA or chromatin loops are tethered to “factories” through the transcription…”
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Transcription Factories: Genome Organization and Gene Regulation by Papantonis, Argyris, Cook, Peter R

“…The authors examine transcription factories with regard to genome organization and gene regulation…”
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Rhythmic entrainment: Why humans want to, fireflies can’t help it, pet birds try, and sea lions have to be bribed by Wilson, Margaret, Cook, Peter F.

“…Until recently, the literature on rhythmic ability took for granted that only humans are able to synchronize body movements to an external beat—to entrain …”
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Transmission losses, infiltration and groundwater recharge through ephemeral and intermittent streambeds: A review of applied methods by Shanafield, Margaret, Cook, Peter G.

“…•Overview of methods to quantify recharge in ephemeral and intermittent streams.•Provides temporal and spatial scales of recharge measured using each…”
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Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes aegypti by Schmidt, Tom L, Barton, Nicholas H, Rašić, Gordana, Turley, Andrew P, Montgomery, Brian L, Iturbe-Ormaetxe, Inaki, Cook, Peter E, Ryan, Peter A, Ritchie, Scott A, Hoffmann, Ary A, O'Neill, Scott L, Turelli, Michael

“…Dengue-suppressing Wolbachia strains are promising tools for arbovirus control, particularly as they have the potential to self-spread following local…”
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Pathogenesis of Respiratory Viral and Fungal Coinfections by Salazar, Fabián, Bignell, Elaine, Brown, Gordon D, Cook, Peter C, Warris, Adilia

“…Individuals suffering from severe viral respiratory tract infections have recently emerged as "at risk" groups for developing invasive fungal infections…”
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Potential for using municipal solid waste as a resource for bioenergy with carbon capture and storage (BECCS) by Pour, Nasim, Webley, Paul A., Cook, Peter J.

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Beyond Classical Observations in Hydrogeology: The Advantages of Including Exchange Flux, Temperature, Tracer Concentration, Residence Time, and Soil Moisture Observations in Groundwater Model Calibration by Schilling, Oliver S., Cook, Peter G., Brunner, Philip

“…Traditionally, groundwater and surface water flow models have been calibrated against two observation types: hydraulic heads and surface water discharge. It…”
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Simulated binding of transcription factors to active and inactive regions folds human chromosomes into loops, rosettes and topological domains by Brackley, Chris A, Johnson, James, Kelly, Steven, Cook, Peter R, Marenduzzo, Davide

“…Biophysicists are modeling conformations of interphase chromosomes, often basing the strengths of interactions between segments distant on the genetic map on…”
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Why the activity of a gene depends on its neighbors by Feuerborn, Alexander, Cook, Peter R

“…Highlights • Sixty years ago gene position was seen to be a major determinant of gene activity. • Nowadays, position effects are no longer central to current…”
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Opportunities for application of BECCS in the Australian power sector by Pour, Nasim, Webley, Paul A., Cook, Peter J.

“…•BECCS in Australia has the potential to deliver 25 Mt CO2/year negative emission.•BECCS could supply up to 13.7 TW h electricity to the Australian power…”
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Managed Aquifer Recharge in Mining: A Review by Sloan, Shannon, Cook, Peter G., Wallis, Ilka

“…Managed aquifer recharge (MAR) has been gaining adoption within the mining industry for managing surplus water volumes and reducing the groundwater impacts of…”
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Quantifying Surface Water, Porewater, and Groundwater Interactions Using Tracers: Tracer Fluxes, Water Fluxes, and End‐member Concentrations by Cook, Peter G., Rodellas, Valentí, Stieglitz, Thomas C.

“…Tracer approaches to estimate both porewater exchange (the cycling of water between surface water and sediments, with zero net water flux) and groundwater…”
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A California Sea Lion (Zalophus californianus) Can Keep the Beat: Motor Entrainment to Rhythmic Auditory Stimuli in a Non Vocal Mimic by Cook, Peter, Rouse, Andrew, Wilson, Margaret, Reichmuth, Colleen

“…Is the ability to entrain motor activity to a rhythmic auditory stimulus, that is "keep a beat," dependent on neural adaptations supporting vocal mimicry? That…”
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On Groundwater Recharge in Variably Saturated Subsurface Flow Models by Gong, Chengcheng, Cook, Peter G., Therrien, René, Wang, Wenke, Brunner, Philip

“…Abstract Groundwater models that simulate only saturated flow use groundwater recharge as an input parameter. In contrast, variably saturated subsurface flow…”
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Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization by Brackley, Chris A, Taylor, Stephen, Papantonis, Argyris, Cook, Peter R, Marenduzzo, Davide

“…Molecular dynamics simulations are used to model proteins that diffuse to DNA, bind, and dissociate; in the absence of any explicit interaction between…”
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BMP Signaling and Its pSMAD1/5 Target Genes Differentially Regulate Hair Follicle Stem Cell Lineages by Genander, Maria, Cook, Peter J., Ramsköld, Daniel, Keyes, Brice E., Mertz, Aaron F., Sandberg, Rickard, Fuchs, Elaine

“…Hair follicle stem cells (HFSCs) and their transit amplifying cell (TAC) progeny sense BMPs at defined stages of the hair cycle to control their proliferation…”
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