Search Results - "Coninck, Dieter De"

Suboptimal culture conditions induce more deviations in gene expression in male than female bovine blastocysts by Heras, Sonia, De Coninck, Dieter I M, Van Poucke, Mario, Goossens, Karen, Bogado Pascottini, Osvaldo, Van Nieuwerburgh, Filip, Deforce, Dieter, De Sutter, Petra, Leroy, Jo L M R, Gutierrez-Adan, Alfonso, Peelman, Luc, Van Soom, Ann

“…Since the development of in vitro embryo production in cattle, different supplements have been added to culture media to support embryo development, with serum…”
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Bisulfite Sequencing with Daphnia Highlights a Role for Epigenetics in Regulating Stress Response to Microcystis through Preferential Differential Methylation of Serine and Threonine Amino Acids by Asselman, Jana, De Coninck, Dieter IM, Beert, Eline, Janssen, Colin R, Orsini, Luisa, Pfrender, Michael E, Decaestecker, Ellen, De Schamphelaere, Karel AC

“…Little is known about the influence that environmental stressors may have on genome-wide methylation patterns, and to what extent epigenetics may be involved…”
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Global cytosine methylation in Daphnia magna depends on genotype, environment, and their interaction by Asselman, Jana, De Coninck, Dieter I.M., Vandegehuchte, Michiel B., Jansen, Mieke, Decaestecker, Ellen, De Meester, Luc, Vanden Bussche, Julie, Vanhaecke, Lynn, Janssen, Colin R., De Schamphelaere, Karel A.C.

“…The authors characterized global cytosine methylation levels in 2 different genotypes of the ecotoxicological model organism Daphnia magna after exposure to a…”
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In vivo study of Dicer-2-mediated immune response of the small interfering RNA pathway upon systemic infections of virulent and avirulent viruses in Bombus terrestris by Niu, Jinzhi, Smagghe, Guy, De Coninck, Dieter I.M., Van Nieuwerburgh, Filip, Deforce, Dieter, Meeus, Ivan

“…Recent studies suggest a potent role of the small interfering RNA (siRNA) pathway in the control of bee viruses and its usefulness to tackle these viral…”
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Identification of Pathways, Gene Networks, and Paralogous Gene Families in Daphnia pulex Responding to Exposure to the Toxic Cyanobacterium Microcystis aeruginosa by Asselman, Jana, De Coninck, Dieter I. M, Glaholt, Stephen, Colbourne, John K, Janssen, Colin R, Shaw, Joseph R, De Schamphelaere, Karel A. C

“…Although cyanobacteria produce a wide range of natural toxins that impact aquatic organisms, food webs, and water quality, the mechanisms of toxicity are still…”
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Genome-Wide Transcription Profiles Reveal Genotype-Dependent Responses of Biological Pathways and Gene-Families in Daphnia Exposed to Single and Mixed Stressors by De Coninck, Dieter I. M, Asselman, Jana, Glaholt, Stephen, Janssen, Colin R, Colbourne, John K, Shaw, Joseph R, De Schamphelaere, Karel A. C

“…The present study investigated the possibilities and limitations of implementing a genome-wide transcription-based approach that takes into account genetic and…”
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The Equine Embryo Influences Immune-Related Gene Expression in the Oviduct by Smits, Katrien, De Coninck, Dieter I M, Van Nieuwerburgh, Filip, Govaere, Jan, Van Poucke, Mario, Peelman, Luc, Deforce, Dieter, Van Soom, Ann

“…Although the equine oviduct clearly affects early embryo development and the selective transport of equine embryos through the oviduct indicates a reciprocal…”
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Interactive effects of a bacterial parasite and the insecticide carbaryl to life-history and physiology of two Daphnia magna clones differing in carbaryl sensitivity by De Coninck, Dieter I.M., De Schamphelaere, Karel A.C., Jansen, Mieke, De Meester, Luc, Janssen, Colin R.

“…► Interactive effects between a bacterial parasite and an insecticide in Daphnia magna. ► Two D. magna clones differing strongly in their sensitivity to the…”
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Conserved transcriptional responses to cyanobacterial stressors are mediated by alternate regulation of paralogous genes in Daphnia by Asselman, Jana, Pfrender, Michael E., Lopez, Jacqueline A., De Coninck, Dieter I. M., Janssen, Colin R., Shaw, Joseph R., De Schamphelaere, Karel A. C.

“…Despite a significant increase in genomic data, our knowledge of gene functions and their transcriptional responses to environmental stimuli remains limited…”
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Gene Body Methylation Patterns in Daphnia Are Associated with Gene Family Size by Asselman, Jana, De Coninck, Dieter I M, Pfrender, Michael E, De Schamphelaere, Karel A C

“…The relation between gene body methylation and gene function remains elusive. Yet, our understanding of this relationship can contribute significant knowledge…”
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Shallow whole genome sequencing is well suited for the detection of chromosomal aberrations in human blastocysts by Deleye, Lieselot, M.Sc, Dheedene, Annelies, M.Sc, De Coninck, Dieter, Ph.D, Sante, Tom, M.Sc, Christodoulou, Christodoulos, M.Sc, Heindryckx, Björn, Ph.D, Van den Abbeel, Etienne, Ph.D, De Sutter, Petra, Ph.D, Deforce, Dieter, Ph.D, Menten, Björn, Ph.D, Van Nieuwerburgh, Filip, Ph.D

“…Objective To add evidence that massive parallel sequencing (MPS) is a valuable substitute for array comparative genomic hybridization (arrayCGH) with a…”
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An investigation of the inter-clonal variation of the interactive effects of cadmium and Microcystis aeruginosa on the reproductive performance of Daphnia magna by De Coninck, Dieter I.M., Janssen, Colin R., De Schamphelaere, Karel A.C.

“…•Interaction of a metal and cyanobacterium in 20 genetically distinct waterflea clones.•All observed effects were non-interactive.•This contrasted expectations…”
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approach to assess the regulatory relevance of microevolutionary effects in ecological risk assessment of chemicals: A case study with cadmium by Coninck, Dieter I.M. De, Janssen, Colin R, Schamphelaere, Karel A.C. De

“…The authors suggest an approach to assess the regulatory relevance of microevolutionary effects of chemicals based on a comparison of concentrations at which…”
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RMNE calculation in forensic profiles with a high number of loci and allelic drop-outs using polynomial expansion by Willems, Sander, Cornelis, Senne, Gansemans, Yannick, Broeckx, Bart, De Coninck, Dieter I.M, Van Neste, Christophe, Dhaenens, Maarten, Deforce, Dieter, Van Nieuwerburgh, Filip

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Massively parallel sequencing of micro-manipulated cells targeting a comprehensive panel of disease-causing genes: A comparative evaluation of upstream whole-genome amplification methods by Deleye, Lieselot, Gansemans, Yannick, De Coninck, Dieter, Van Nieuwerburgh, Filip, Deforce, Dieter

“…Single Gene Disorders (SGD) are still routinely diagnosed using PCR-based assays that need to be developed and validated for each individual disease-specific…”
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Genome-Wide Copy Number Alteration Detection in Preimplantation Genetic Diagnosis by Deleye, Lieselot, De Coninck, Dieter, Deforce, Dieter, Van Nieuwerburgh, Filip

“…Shallow whole genome sequencing has recently been introduced for genome-wide detection of chromosomal copy number alterations (CNAs) in preimplantation genetic…”
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Genetic characterization of ESBL-producing and ciprofloxacin-resistant Escherichia coli from Belgian broilers and pigs by De Koster, Sien, Ringenier, Moniek, Xavier, Basil Britto, Lammens, Christine, De Coninck, Dieter, De Bruyne, Katrien, Mensaert, Klaas, Kluytmans-van den Bergh, Marjolein, Kluytmans, Jan, Dewulf, Jeroen, Goossens, Herman

“…The increasing number of infections caused by resistant to clinically important antibiotics is a global concern for human and animal health. High overall…”
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Whole genome amplification with SurePlex results in better copy number alteration detection using sequencing data compared to the MALBAC method by Deleye, Lieselot, Coninck, Dieter De, Christodoulou, Christodoulos, Sante, Tom, Dheedene, Annelies, Heindryckx, Björn, Abbeel, Etienne Van den, Sutter, Petra De, Menten, Björn, Deforce, Dieter, Nieuwerburgh, Filip Van

“…Current whole genome amplification (WGA) methods lead to amplification bias resulting in over- and under-represented regions in the genome. Nevertheless,…”
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Performance of a TthPrimPol-based whole genome amplification kit for copy number alteration detection using massively parallel sequencing by Deleye, Lieselot, De Coninck, Dieter, Dheedene, Annelies, De Sutter, Petra, Menten, Björn, Deforce, Dieter, Van Nieuwerburgh, Filip

“…Starting from only a few cells, current whole genome amplification (WGA) methods provide enough DNA to perform massively parallel sequencing (MPS)…”
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The Equine Embryo Influences Immune-Related Gene Expression in the Oviduct1 by Smits, Katrien, De Coninck, Dieter I.M, Van Nieuwerburgh, Filip, Govaere, Jan, Van Poucke, Mario, Peelman, Luc, Deforce, Dieter, Van Soom, Ann

“…Although the equine oviduct clearly affects early embryo development and the selective transport of equine embryos through the oviduct indicates a reciprocal…”
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