Search Results - "Collura, Kristi"

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice by Piegu, Benoit, Guyot, Romain, Picault, Nathalie, Roulin, Anne, Sanyal, Abhijit, Saniyal, Abhijit, Kim, Hyeran, Collura, Kristi, Brar, Darshan S, Jackson, Scott, Wing, Rod A, Panaud, Olivier

“…Retrotransposons are the main components of eukaryotic genomes, representing up to 80% of some large plant genomes. These mobile elements transpose via a "copy…”
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The physical and genetic framework of the maize B73 genome by Wei, Fusheng, Zhang, Jianwei, Zhou, Shiguo, He, Ruifeng, Schaeffer, Mary, Collura, Kristi, Kudrna, David, Faga, Ben P, Wissotski, Marina, Golser, Wolfgang, Rock, Susan M, Graves, Tina A, Fulton, Robert S, Coe, Ed, Schnable, Patrick S, Schwartz, David C, Ware, Doreen, Clifton, Sandra W, Wilson, Richard K, Wing, Rod A

“…Maize is a major cereal crop and an important model system for basic biological research. Knowledge gained from maize research can also be used to genetically…”
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Transposable element distribution, abundance and role in genome size variation in the genus Oryza by Zuccolo, Andrea, Sebastian, Aswathy, Talag, Jayson, Yu, Yeisoo, Kim, HyeRan, Collura, Kristi, Kudrna, Dave, Wing, Rod A

“…The genus Oryza is composed of 10 distinct genome types, 6 diploid and 4 polyploid, and includes the world's most important food crop - rice (Oryza sativa…”
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Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza by Ammiraju, Jetty S.S, Fan, Chuanzhu, Yu, Yeisoo, Song, Xiang, Cranston, Karen A, Pontaroli, Ana Clara, Lu, Fei, Sanyal, Abhijit, Jiang, Ning, Rambo, Teri, Currie, Jennifer, Collura, Kristi, Talag, Jayson, Bennetzen, Jeffrey L, Chen, Mingsheng, Jackson, Scott, Wing, Rod A

“…Despite knowledge that polyploidy is widespread and a major evolutionary force in flowering plant diversification, detailed comparative molecular studies on…”
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An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research by Febrer, Melanie, Goicoechea, Jose Luis, Wright, Jonathan, McKenzie, Neil, Song, Xiang, Lin, Jinke, Collura, Kristi, Wissotski, Marina, Yu, Yeisoo, Ammiraju, Jetty S S, Wolny, Elzbieta, Idziak, Dominika, Betekhtin, Alexander, Kudrna, Dave, Hasterok, Robert, Wing, Rod A, Bevan, Michael W

“…The pooid subfamily of grasses includes some of the most important crop, forage and turf species, such as wheat, barley and Lolium. Developing genomic…”
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Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs by Soderlund, Carol, Descour, Anne, Kudrna, Dave, Bomhoff, Matthew, Boyd, Lomax, Currie, Jennifer, Angelova, Angelina, Collura, Kristi, Wissotski, Marina, Ashley, Elizabeth, Morrow, Darren, Fernandes, John, Walbot, Virginia, Yu, Yeisoo

“…Full-length cDNA (FLcDNA) sequencing establishes the precise primary structure of individual gene transcripts. From two libraries representing 27 B73 tissues…”
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A draft physical map of a D-genome cotton species (Gossypium raimondii) by Lin, Lifeng, Pierce, Gary J, Bowers, John E, Estill, James C, Compton, Rosana O, Rainville, Lisa K, Kim, Changsoo, Lemke, Cornelia, Rong, Junkang, Tang, Haibao, Wang, Xiyin, Braidotti, Michele, Chen, Amy H, Chicola, Kristen, Collura, Kristi, Epps, Ethan, Golser, Wolfgang, Grover, Corrinne, Ingles, Jennifer, Karunakaran, Santhosh, Kudrna, Dave, Olive, Jaime, Tabassum, Nabila, Um, Eareana, Wissotski, Marina, Yu, Yeisoo, Zuccolo, Andrea, ur Rahman, Mehboob, Peterson, Daniel G, Wing, Rod A, Wendel, Jonathan F, Paterson, Andrew H

“…Genetically anchored physical maps of large eukaryotic genomes have proven useful both for their intrinsic merit and as an adjunct to genome sequencing…”
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The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research by Song, Xiang, Goicoechea, Jose Luis, Ammiraju, Jetty S S, Luo, Meizhong, He, Ruifeng, Lin, Jinke, Lee, So-Jeong, Sisneros, Nicholas, Watts, Tom, Kudrna, David A, Golser, Wolfgang, Ashley, Elizabeth, Collura, Kristi, Braidotti, Michele, Yu, Yeisoo, Matzkin, Luciano M, McAllister, Bryant F, Markow, Therese Ann, Wing, Rod A

“…The genus Drosophila has been the subject of intense comparative phylogenomics characterization to provide insights into genome evolution under diverse…”
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Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type) by Kim, H.R, Miguel, P.S, Nelson, W, Collura, K, Wissotski, M, Walling, J.G, Kim, J.P, Jackson, S.A, Soderlund, C, Wing, R.A

“…A comparative physical map of the AA genome (Oryza sativa) and the BB genome (O. punctata) was constructed by aligning a physical map of O. punctata, deduced…”
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Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey by Luo, Meizhong, Kim, Hyeran, Kudrna, Dave, Sisneros, Nicholas B, Lee, So-Jeong, Mueller, Christopher, Collura, Kristi, Zuccolo, Andrea, Buckingham, E Bryan, Grim, Suzanne M, Yanagiya, Kazuyo, Inoko, Hidetoshi, Shiina, Takashi, Flajnik, Martin F, Wing, Rod A, Ohta, Yuko

“…Sharks are members of the taxonomic class Chondrichthyes, the oldest living jawed vertebrates. Genomic studies of this group, in comparison to representative…”
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Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains by Nelson, William, Luo, Meizhong, Ma, Jianxin, Estep, Matt, Estill, James, He, Ruifeng, Talag, Jayson, Sisneros, Nicholas, Kudrna, David, Kim, HyeRan, Ammiraju, Jetty S S, Collura, Kristi, Bharti, Arvind K, Messing, Joachim, Wing, Rod A, SanMiguel, Phillip, Bennetzen, Jeffrey L, Soderlund, Carol

“…Many plant genomes are resistant to whole-genome assembly due to an abundance of repetitive sequence, leading to the development of gene-rich sequencing…”
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Dynamic Evolution of Oryza Genomes Is Revealed by Comparative Genomic Analysis of a Genus-Wide Vertical Data Set by Ammiraju, Jetty S.S, Lu, Fei, Sanyal, Abhijit, Yu, Yeisoo, Song, Xiang, Jiang, Ning, Pontaroli, Ana Clara, Rambo, Teri, Currie, Jennifer, Collura, Kristi, Talag, Jayson, Fan, Chuanzhu, Goicoechea, Jose Luis, Zuccolo, Andrea, Chen, Jinfeng, Bennetzen, Jeffrey L, Chen, Mingsheng, Jackson, Scott, Wing, Rod A

“…Oryza (23 species; 10 genome types) contains the world's most important food crop -- rice. Although the rice genome serves as an essential tool for biological…”
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Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza by Kim, HyeRan, Hurwitz, Bonnie, Yu, Yeisoo, Collura, Kristi, Gill, Navdeep, SanMiguel, Phillip, Mullikin, James C, Maher, Christopher, Nelson, William, Wissotski, Marina, Braidotti, Michele, Kudrna, David, Goicoechea, José Luis, Stein, Lincoln, Ware, Doreen, Jackson, Scott A, Soderlund, Carol, Wing, Rod A

“…We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced…”
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The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications by Choisne, Nathalie, Demange, Nadia, Orjeda, Gisela, Samain, Sylvie, D'Hont, Angelique, Cattolico, Laurence, Pelletier, Eric, Couloux, Arnaud, Segurens, Beatrice, Wincker, Patrick, Scarpelli, Claude, Weissenbach, Jean, Salanobat, Marcel, Quetier, Francis, Singh, Nagendra K., Mohapatra, Trilochan, Sharma, Tilak R., Gaikwad, Kishor, Singh, Archana, Dalal, Vivek, Srivastava, Subodh K., Dixit, Anupam, Pal, Ajit K., Ghaz, Irfan A., Yadav, Mahavir, Pandit, Awadhesh, Bhargava, Ashutosh, Sureshbabu, K., Dixit, Rekha, Singh, Harvinder, Swain, Suresh C., Pal, Sumita, Ragiba, M., Singh, Pradeep K., Singha, Vibha, Mendiratta, Sangeeta D., Batra, Kamlesh, Raghuvanshi, Saurabh, Mohanty, Amitabh, Bhart, Arvind K., Gaur, Anupama, Gupta, Vikrant, Kumar, Dibyendu, Vydianathan, Ravi, Vij, Shubha

“…Rice is an important staple food and, with the smallest cereal genome, serves as a reference species for studies on the evolution of cereals and other grasses…”
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A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure by Zuccolo, Andrea, Bowers, John E, Estill, James C, Xiong, Zhiyong, Luo, Meizhong, Sebastian, Aswathy, Goicoechea, José Luis, Collura, Kristi, Yu, Yeisoo, Jiao, Yuannian, Duarte, Jill, Tang, Haibao, Ayyampalayam, Saravanaraj, Rounsley, Steve, Kudrna, Dave, Paterson, Andrew H, Pires, J Chris, Chanderbali, Andre, Soltis, Douglas E, Chamala, Srikar, Barbazuk, Brad, Soltis, Pamela S, Albert, Victor A, Ma, Hong, Mandoli, Dina, Banks, Jody, Carlson, John E, Tomkins, Jeffrey, dePamphilis, Claude W, Wing, Rod A, Leebens-Mack, Jim

“…Recent phylogenetic analyses have identified Amborella trichopoda, an understory tree species endemic to the forests of New Caledonia, as sister to a clade…”
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Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza: Genome evolution in polyploid Oryza by Ammiraju, Jetty S. S., Fan, Chuanzhu, Yu, Yeisoo, Song, Xiang, Cranston, Karen A., Pontaroli, Ana Clara, Lu, Fei, Sanyal, Abhijit, Jiang, Ning, Rambo, Teri, Currie, Jennifer, Collura, Kristi, Talag, Jayson, Bennetzen, Jeffrey L., Chen, Mingsheng, Jackson, Scott, Wing, Rod A.

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Sequencing, Mapping, and Analysis of 27,455 Maize Full-Length cDNAs: e1000740 by Soderlund, Carol, Descour, Anne, Kudrna, Dave, Bomhoff, Matthew, Boyd, Lomax, Currie, Jennifer, Angelova, Angelina, Collura, Kristi, Wissotski, Marina, Ashley, Elizabeth, Morrow, Darren, Fernandes, John, Walbot, Virginia, Yu, Yeisoo

“…Full-length cDNA (FLcDNA) sequencing establishes the precise primary structure of individual gene transcripts. From two libraries representing 27 B73 tissues…”
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Comparative sequence analysis of the SALT OVERLY SENSITIVE1 orthologous region in Thellungiella halophila and Arabidopsis thaliana by Nah, Gyoungju, Pagliarulo, Christopher L., Mohr, Peter G., Luo, Meizhong, Sisneros, Nick, Yu, Yeisoo, Collura, Kristi, Currie, Jennifer, Goicoechea, Jose Luis, Wing, Rod A., Schumaker, Karen S.

“…To provide a framework for studies to understand the contribution of SALT OVERLY SENSITIVE1 (SOS1) to salt tolerance in Thellungiella halophila, we sequenced…”
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Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species by Buell, C Robin, Yuan, Qiaoping, Ouyang, Shu, Liu, Jia, Zhu, Wei, Wang, Aihui, Maiti, Rama, Haas, Brian, Wortman, Jennifer, Pertea, Mihaela, Jones, Kristine M, Kim, Mary, Overton, Larry, Tsitrin, Tamara, Fadrosh, Douglas, Bera, Jayati, Weaver, Bruce, Jin, Shaohua, Johri, Shivani, Reardon, Matt, Webb, Kristen, Hill, Jessica, Moffat, Kelly, Tallon, Luke, Van Aken, Susan, Lewis, Matthew, Utterback, Teresa, Feldblyum, Tamara, Zismann, Victoria, Iobst, Stacey, Hsiao, Joseph, de Vazeille, Aymeric R, Salzberg, Steven L, White, Owen, Fraser, Claire, Yu, Yeisoo, Kim, HeyRan, Rambo, Teri, Currie, Jennifer, Collura, Kristi, Kernodle-Thompson, Shelly, Wei, Fusheng, Kudrna, Kudrna, Ammiraju, Jetty Siva S, Luo, Meizhong, Goicoechea, Jose Luis, Wing, Rod A, Henry, David, Oates, Ryan, Palmer, Michael, Pries, Gina, Saski, Christopher, Simmons, Jessica, Soderlund, Carol, Nelson, William, de la Bastide, Melissa, Spiegel, Lori, Nascimento, Lidia, Huang, Emily, Preston, Raymond, Zutavern, Theresa, Palmer, Lance, O'Shaughnessy, Andrew, Dike, Sujit, McCombie, W Richard, Minx, Pat, Cordum, Holly, Wilson, Richard, Jin, Weiwei, Lee, Hye-Ran, Jiang, Jiming, Jackson, Scott

“…Rice (Oryza sativa L.) chromosome 3 is evolutionarily conserved across the cultivated cereals and shares large blocks of synteny with maize and sorghum, which…”
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The Physical and Genetic Framework of the Maize B73 Genome: e1000715 by Wei, Fusheng, Zhang, Jianwei, Zhou, Shiguo, He, Ruifeng, Schaeffer, Mary, Collura, Kristi, Kudrna, David, Faga, Ben P, Wissotski, Marina, Golser, Wolfgang, Rock, Susan M, Graves, Tina A, Fulton, Robert S, Coe, Ed, Schnable, Patrick S, Schwartz, David C, Ware, Doreen, Clifton, Sandra W, Wilson, Richard K, Wing, Rod A

“…Maize is a major cereal crop and an important model system for basic biological research. Knowledge gained from maize research can also be used to genetically…”
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