Search Results - "Colin, M A"

Heterotachy in mammalian promoter evolution by Taylor, Martin S, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Semple, Colin A M

“…We have surveyed the evolutionary trends of mammalian promoters and upstream sequences, utilising large sets of experimentally supported transcription start…”
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High-throughput analysis of epistasis in genome-wide association studies with BiForce by GYENESEI, Attila, MOODY, Jonathan, SEMPLE, Colin A. M, HALEY, Chris S, WEI, Wen-Hua

“…Gene-gene interactions (epistasis) are thought to be important in shaping complex traits, but they have been under-explored in genome-wide association studies…”
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Properties of local interactions and their potential value in complementing genome-wide association studies by Wei, Wenhua, Gyenesei, Attila, Semple, Colin A M, Haley, Chris S

“…Local interactions between neighbouring SNPs are hypothesized to be able to capture variants missing from genome-wide association studies (GWAS) via haplotype…”
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Widespread signatures of recent selection linked to nucleosome positioning in the human lineage by Prendergast, James G D, Semple, Colin A M

“…In this study we investigated the strengths and modes of selection associated with nucleosome positioning in the human lineage through the comparison of…”
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Chromatin structure and evolution in the human genome by Prendergast, James G D, Campbell, Harry, Gilbert, Nick, Dunlop, Malcolm G, Bickmore, Wendy A, Semple, Colin A M

“…Evolutionary rates are not constant across the human genome but genes in close proximity have been shown to experience similar levels of divergence and…”
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New Roles for cis-Jasmone as an Insect Semiochemical and in Plant Defense by Birkett, Michael A., Colin A. M. Campbell, Chamberlain, Keith, Guerrieri, Emilio, Hick, Alastair J., Martin, Janet L., Matthes, Michaela, Napier, Johnathan A., Pettersson, Jan, Pickett, John A., Poppy, Guy M., Pow, Eleanor M., Pye, Barry J., Smart, Lesley E., Wadhams, George H., Wadhams, Lester J., Woodcock, Christine M.

“…cis-Jasmone, or (Z)-jasmone, is well known as a component of plant volatiles, and its release can be induced by damage, for example during insect herbivory…”
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The Sex Pheromones of Mealy Plum (Hyalopterus pruni) and Leaf-Curl Plum (Brachycaudus helichrysi) Aphids: Identification and Field Trapping of Male and Gynoparous Aphids in Prune Orchards by Symmes, Emily J., Dewhirst, Sarah Y., Birkett, Michael A., Campbell, Colin A. M., Chamberlain, Keith, Pickett, John A., Zalom, Frank G.

“…Mealy plum, Hyalopterus pruni , and leaf-curl plum, Brachycaudus helichrysi , aphids are the primary arthropod pests in orchards that produce dried plums…”
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The retroviral proteinase active site and the N-terminus of Ddi1 are required for repression of protein secretion by White, Rhian E., Dickinson, J. Richard, Semple, Colin A.M., Powell, David J., Berry, Colin

“…The Ddi1 protein of the yeast Saccharomyces cerevisiae is involved in numerous interactions with the ubiquitin system, which may be mediated by its N-terminal…”
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Interactions Between Host-plant Volatiles and the Sex Pheromones of the Bird Cherry-oat Aphid, Rhopalosiphum padi and the Damson-hop Aphid, Phorodon humuli by Pope, Tom W, Campbell, Colin A. M, Hardie, Jim, Pickett, John A, Wadhams, Lester J

“…The bird cherry-oat aphid, Rhopalosiphum padi (L.), and the damson-hop aphid, Phorodon humuli (Schrank), migrate at the same time of year and colonize closely…”
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A genome-wide screen in human embryonic stem cells reveals novel sites of allele-specific histone modification associated with known disease loci by Prendergast, James G D, Tong, Pin, Hay, David C, Farrington, Susan M, Semple, Colin A M

“…Chromatin structure at a given site can differ between chromosome copies in a cell, and such imbalances in chromatin structure have been shown to be important…”
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Sensory profile development of Oaxaca cheese and relationship with physicochemical parameters by Sandoval-Copado, J, Orozco-Villafuerte, J, Pedrero-Fuehrer, D, Colín-Cruz, M A

“…A sensory profile of Oaxaca cheese was developed. To represent both industrial and artisanal Oaxaca cheese, 3 types of cheese were manufactured under…”
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New and resurgent insect pests on low trellis hops by Campbell, Colin A. M.

“…Selective insecticides have largely displaced broad‐spectrum products on cultivated hops, allowing a resurgence of historic pests and new ones to arise. The…”
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The genomic signature of trait-associated variants by Kindt, Alida S D, Navarro, Pau, Semple, Colin A M, Haley, Chris S

“…Genome-wide association studies have identified thousands of SNP variants associated with hundreds of phenotypes. For most associations the causal variants and…”
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Attraction range of a sex pheromone trap for the damson‐hop aphid Phorodon humuli (Hemiptera: Aphididae) by Campbell, Colin A. M., Hardie, Jim, Wadhams, Lester J.

“…The attraction range of olfactory response by winged female gynoparae (autumn migrants that give birth to oviparae, the sexual females) and male damson–hop…”
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Computational disease gene identification: a concert of methods prioritizes type 2 diabetes and obesity candidate genes by Tiffin, Nicki, Adie, Euan, Turner, Frances, Brunner, Han G., van Driel, Marc A., Oti, Martin, Lopez-Bigas, Nuria, Ouzounis, Christos, Perez-Iratxeta, Carolina, Andrade-Navarro, Miguel A., Adeyemo, Adebowale, Patti, Mary Elizabeth, Semple, Colin A. M., Hide, Winston

“…Genome-wide experimental methods to identify disease genes, such as linkage analysis and association studies, generate increasingly large candidate gene sets…”
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BiForce Toolbox: powerful high-throughput computational analysis of gene-gene interactions in genome-wide association studies by Gyenesei, Attila, Moody, Jonathan, Laiho, Asta, Semple, Colin A M, Haley, Chris S, Wei, Wen-Hua

“…Genome-wide association studies (GWAS) have discovered many loci associated with common disease and quantitative traits. However, most GWAS have not studied…”
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Sequence-level mechanisms of human epigenome evolution by Prendergast, James G D, Chambers, Emily V, Semple, Colin A M

“…DNA methylation and chromatin states play key roles in development and disease. However, the extent of recent evolutionary divergence in the human epigenome…”
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Co-encapsulation of bioactive compounds from blackberry juice and probiotic bacteria in biopolymeric matrices by Colín-Cruz, M.A., Pimentel-González, D.J., Carrillo-Navas, H., Alvarez-Ramírez, J., Guadarrama-Lezama, A.Y.

“…Blackberry juice (BJ) and Lactobacillus acidophilus (LA) were co-encapsulated by spray drying in three single materials: gum Arabic (GA), maltodextrin (MD) and…”
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The complexity of selection at the major primate beta-defensin locus by Semple, Colin A M, Maxwell, Alison, Gautier, Philippe, Kilanowski, Fiona M, Eastwood, Hayden, Barran, Perdita E, Dorin, Julia R

“…We have examined the evolution of the genes at the major human beta-defensin locus and the orthologous loci in a range of other primates and mouse. For the…”
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Responses of the aphids Phorodon humuli and Rhopalosiphum padi to sex pheromone stereochemistry in the field by Campbell, C.A.M, Cook, F.J, Pickett, J.A, Pope, T.W, Wadhams, L.J, Woodcock, C.M

“…Gynoparous female and male damson-hop aphids, Phorodon humuli (Schrank), were caught in the field by water traps that were releasing the sex pheromone of this…”
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