Search Results - "Cohen, Serge"

Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7 by Lamzin, Victor S, Perrakis, Anastassis, Langer, Gerrit, Cohen, Serge X

“…ARP/wARP is a software suite to build macromolecular models in X-ray crystallography electron density maps. Structural genomics initiatives and the study of…”
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Disentangling the chemistry of Australian plant exudates from a unique historical collection by Georgiou, Rafaella, Popelka-Filcoff, Rachel S, Sokaras, Dimosthenis, Beltran, Victoria, Bonaduce, Ilaria, Spangler, Jordan, Cohen, Serge X, Lehmann, Roy, Bernard, Sylvain, Rueff, Jean-Pascal, Bergmann, Uwe, Bertrand, Loïc

“…Significance For millennia, Aboriginal Australian peoples have used the extraordinary physicochemical properties of plant exudates from practical applications…”
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Deciphering the Chemistry of Cultural Heritage: Targeting Material Properties by Coupling Spectral Imaging with Image Analysis by Bertrand, Loïc, Thoury, Mathieu, Gueriau, Pierre, Anheim, Étienne, Cohen, Serge

“…Conspectus The chemical study of materials from natural history and cultural heritage, which provide information for art history, archeology, or paleontology,…”
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Synchrotron-Based Phase Mapping in Corroded Metals: Insights from Early Copper-Base Artifacts by Li, Jiayi, Guériau, Pierre, Bellato, Marta, King, Andrew, Robbiola, Luc, Thoury, Mathieu, Baillon, Martin, Fossé, Cécile, Cohen, Serge X, Moulhérat, Christophe, Thomas, Ariane, Galtier, Pierre, Bertrand, Loïc

“…The detailed description of corrosion processes in ancient and historical metal artifacts currently relies on the in-depth study of prepared cross sections…”
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Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank by Joosten, Robbie P., Joosten, Krista, Cohen, Serge X., Vriend, Gert, Perrakis, Anastassis

“…Motivation: Macromolecular crystal structures in the Protein Data Bank (PDB) are a key source of structural insight into biological processes. These…”
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Trace elemental imaging of rare earth elements discriminates tissues at microscale in flat fossils by Gueriau, Pierre, Mocuta, Cristian, Dutheil, Didier B, Cohen, Serge X, Thiaudière, Dominique, Charbonnier, Sylvain, Clément, Gaël, Bertrand, Loïc

“…The interpretation of flattened fossils remains a major challenge due to compression of their complex anatomies during fossilization, making critical…”
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Robust framework and software implementation for fast speciation mapping by Cohen, Serge X., Webb, Samuel M., Gueriau, Pierre, Curis, Emmanuel, Bertrand, Loïc

“…One of the greatest benefits of synchrotron radiation is the ability to perform chemical speciation analysis through X‐ray absorption spectroscopies (XAS). XAS…”
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ARP/wARP and molecular replacement: the next generation by Cohen, Serge X., Ben Jelloul, Marouane, Long, Fei, Vagin, Alexei, Knipscheer, Puck, Lebbink, Joyce, Sixma, Titia K., Lamzin, Victor S., Murshudov, Garib N., Perrakis, Anastassis

“…Automatic iterative model (re‐)building, as implemented in ARP/wARP and its new control system flex‐wARP, is particularly well suited to follow structure…”
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Intranuclear Expression of Progesterone Receptors in Smooth Muscle Cells of Renovascular Fibromuscular Dysplasia: A Pilot Study by Silhol, François, Sarlon-Bartoli, Gabrielle, Daniel, Laurent, Bartoli, Jean Michel, Cohen, Serge, Lepidi, Hubert, Piquet, Philippe, Bartoli, Michel Alain, Vaïsse, Bernard

“…Background The pathogenesis of fibromuscular dysplasia (FMD) remains poorly understood. Yet, understanding this mechanism has taken on new urgency after recent…”
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Identification of the finishing technique of an early eighteenth century musical instrument using FTIR spectromicroscopy by Bertrand, Loïc, Robinet, Laurianne, Cohen, Serge X, Sandt, Christophe, Le Hô, Anne-Solenn, Soulier, Balthazar, Lattuati-Derieux, Agnès, Echard, Jean-Philippe

“…The study of varnishes from musical instruments presents the difficulty of analysing very thin layers of heterogeneous materials on samples most of which are…”
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Co-expression of protein complexes in prokaryotic and eukaryotic hosts: experimental procedures, database tracking and case studies by Romier, Christophe, Ben Jelloul, Marouane, Albeck, Shira, Buchwald, Gretel, Busso, Didier, Celie, Patrick H. N., Christodoulou, Evangelos, De Marco, Valeria, Van Gerwen, Suzan, Knipscheer, Puck, Lebbink, Joyce H., Notenboom, Valerie, Poterszman, Arnaud, Rochel, Natacha, Cohen, Serge X., Unger, Tamar, Sussman, Joel L., Moras, Dino, Sixma, Titia K., Perrakis, Anastassis

“…Structure determination and functional characterization of macromolecular complexes requires the purification of the different subunits in large quantities and…”
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Towards complete validated models in the next generation of ARP/wARP by Cohen, Serge X., Morris, Richard J., Fernandez, Francisco J., Ben Jelloul, Marouane, Kakaris, Mattheos, Parthasarathy, Venkataraman, Lamzin, Victor S., Kleywegt, Gerard J., Perrakis, Anastassis

“…The design of a new versatile control system that will underlie future releases of the automated model‐building package ARP/wARP is presented. A sophisticated…”
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Native mass spectrometry provides direct evidence for DNA mismatch-induced regulation of asymmetric nucleotide binding in mismatch repair protein MutS by Monti, Maria Chiara, Cohen, Serge X., Fish, Alexander, Winterwerp, Herrie H. K., Barendregt, Arjan, Friedhoff, Peter, Perrakis, Anastassis, Heck, Albert J. R., Sixma, Titia K., van den Heuvel, Robert H. H., Lebbink, Joyce H. G.

“…The DNA mismatch repair protein MutS recognizes mispaired bases in DNA and initiates repair in an ATP-dependent manner. Understanding of the allosteric…”
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Conservative Treatment of Spontaneous and Isolated Dissection of Mesenteric Arteries by Amabile, Philippe, Ouaïssi, Mehdi, Cohen, Serge, Piquet, Philippe

“…Background Isolated and spontaneous dissection of mesenteric arteries is a rare entity; a little more than 50 cases have been reported in medical literature…”
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A knowledge-driven approach for crystallographic protein model completion by Joosten, Krista, Cohen, Serge X., Emsley, Paul, Mooij, Wijnand, Lamzin, Victor S., Perrakis, Anastassis

“…One of the most cumbersome and time‐demanding tasks in completing a protein model is building short missing regions or `loops'. A method is presented that uses…”
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“Conditional Restraints”: Restraining the Free Atoms in ARP/wARP by Mooij, Wijnand T.M., Cohen, Serge X., Joosten, Krista, Murshudov, Garib N., Perrakis, Anastassis

“…The automated building of a protein model into an electron density map remains a challenging problem. In the ARP/wARP approach, model building is facilitated…”
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Breaking good resolutions with ARP/wARP by Morris, Richard J, Zwart, Petrus H, Cohen, Serge, Fernandez, Francisco J, Kakaris, Mattheos, Kirillova, Olga, Vonrhein, Clemens, Perrakis, Anastassis, Lamzin, Victor S

“…New procedures are outlined that enable ARP/wARP to automatically build protein models with diffraction data extending to about 2.5 A. An overview of ongoing…”
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Structure of the GCM domain-DNA complex: a DNA-binding domain with a novel fold and mode of target site recognition by Cohen, Serge X., Moulin, Martine, Hashemolhosseini, Said, Kilian, Karin, Wegner, Michael, Müller, Christoph W.

“…Glia cell missing (GCM) transcription factors form a small family of transcriptional regulators in metazoans. The prototypical Drosophila GCM protein directs…”
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Insights into the DNA cleavage mechanism of human LINE‐1 retrotransposon endonuclease by Repanas, Kostas, Fuentes, Gloria, Cohen, Serge X., Bonvin, Alexandre M. J. J., Perrakis, Anastassis

“…The human LINE‐1 endonuclease (L1‐EN) contributes in defining the genomic integration sites of the abundant human L1 and Alu retrotransposons. LINEs have been…”
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FracSim : An R Package to Simulate Multifractional Lévy Motions by Déjean, Sébastien, Cohen, Serge

“…In this article a procedure is proposed to simulate fractional fields, which are non Gaussian counterpart of the fractional Brownian motion. These fields,…”
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