Search Results - "Clavijo, Bernardo J"

KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies by Mapleson, Daniel, Garcia Accinelli, Gonzalo, Kettleborough, George, Wright, Jonathan, Clavijo, Bernardo J

“…De novo assembly of whole genome shotgun (WGS) next-generation sequencing (NGS) data benefits from high-quality input with high coverage. However, in practice,…”
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NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries by Leggett, Richard M, Clavijo, Bernardo J, Clissold, Leah, Clark, Matthew D, Caccamo, Mario

“…Illumina's recently released Nextera Long Mate Pair (LMP) kit enables production of jumping libraries of up to 12 kb. The LMP libraries are an invaluable…”
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The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum by Zimin, Aleksey V, Puiu, Daniela, Hall, Richard, Kingan, Sarah, Clavijo, Bernardo J, Salzberg, Steven L

“…Common bread wheat, Triticum aestivum, has one of the most complex genomes known to science, with 6 copies of each chromosome, enormous numbers of…”
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Genome‐guided investigation of plant natural product biosynthesis by Kellner, Franziska, Kim, Jeongwoon, Clavijo, Bernardo J, Hamilton, John P, Childs, Kevin L, Vaillancourt, Brieanne, Cepela, Jason, Habermann, Marc, Steuernagel, Burkhard, Clissold, Leah, McLay, Kirsten, Buell, Carol Robin, O'Connor, Sarah E

“…The medicinal plant Madagascar periwinkle, Catharanthus roseus (L.) G. Don, produces hundreds of biologically active monoterpene‐derived indole alkaloid (MIA)…”
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Analysis of the recombination landscape of hexaploid bread wheat reveals genes controlling recombination and gene conversion frequency by Gardiner, Laura-Jayne, Wingen, Luzie U, Bailey, Paul, Joynson, Ryan, Brabbs, Thomas, Wright, Jonathan, Higgins, James D, Hall, Neil, Griffiths, Simon, Clavijo, Bernardo J, Hall, Anthony

“…Sequence exchange between homologous chromosomes through crossing over and gene conversion is highly conserved among eukaryotes, contributing to genome…”
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A Genome Assembly of the Barley 'Transformation Reference' Cultivar Golden Promise by Schreiber, Miriam, Mascher, Martin, Wright, Jonathan, Padmarasu, Sudharasan, Himmelbach, Axel, Heavens, Darren, Milne, Linda, Clavijo, Bernardo J, Stein, Nils, Waugh, Robbie

“…Barley ( ) is one of the most important crops worldwide and is also considered a research model for the large-genome small grain temperate cereals. Despite…”
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Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics by Leggett, Richard M, Ramirez-Gonzalez, Ricardo H, Clavijo, Bernardo J, Waite, Darren, Davey, Robert P

“…The processes of quality assessment and control are an active area of research at The Genome Analysis Centre (TGAC). Unlike other sequencing centers that often…”
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A Sequence Distance Graph framework for genome assembly and analysis [version 1; peer review: awaiting peer review] by Yanes, Luis, Garcia Accinelli, Gonzalo, Wright, Jonathan, Ward, Ben J, Clavijo, Bernardo J

“…The Sequence Distance Graph (SDG) framework works with genome assembly graphs and raw data from paired, linked and long reads. It includes a simple deBruijn…”
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Genome sequence and genetic diversity of European ash trees by Sollars, Elizabeth S. A., Harper, Andrea L., Kelly, Laura J., Sambles, Christine M., Ramirez-Gonzalez, Ricardo H., Swarbreck, David, Kaithakottil, Gemy, Cooper, Endymion D., Uauy, Cristobal, Havlickova, Lenka, Worswick, Gemma, Studholme, David J., Zohren, Jasmin, Salmon, Deborah L., Clavijo, Bernardo J., Li, Yi, He, Zhesi, Fellgett, Alison, McKinney, Lea Vig, Nielsen, Lene Rostgaard, Douglas, Gerry C., Kjær, Erik Dahl, Downie, J. Allan, Boshier, David, Lee, Steve, Clark, Jo, Grant, Murray, Bancroft, Ian, Caccamo, Mario, Buggs, Richard J. A.

“…The genome sequence and genetic diversity of European ash ( Fraxinus excelsior ) trees reveals the species’ varying susceptibility to ash dieback. Genome…”
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The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability by Li, Jing-Woei, Bolser, Dan, Manske, Magnus, Giorgi, Federico Manuel, Vyahhi, Nikolay, Usadel, Björn, Clavijo, Bernardo J, Chan, Ting-Fung, Wong, Nathalie, Zerbino, Daniel, Schneider, Maria Victoria

“…Next-generation sequencing (NGS) is increasingly being adopted as the backbone of biomedical research. With the commercialization of various affordable desktop…”
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Genome interplay in the grain transcriptome of hexaploid bread wheat by Pfeifer, Matthias, Kugler, Karl G., Sandve, Simen R., Zhan, Bujie, Rudi, Heidi, Hvidsten, Torgeir R., Mayer, Klaus F. X., Olsen, Odd-Arne

“…Allohexaploid bread wheat (Triticum aestivum L.) provides approximately 20% of calories consumed by humans. Lack of genome sequence for the three homeologous…”
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The ash dieback invasion of Europe was founded by two genetically divergent individuals by McMullan, Mark, Rafiqi, Maryam, Kaithakottil, Gemy, Clavijo, Bernardo J., Bilham, Lorelei, Orton, Elizabeth, Percival-Alwyn, Lawrence, Ward, Ben J., Edwards, Anne, Saunders, Diane G. O., Garcia Accinelli, Gonzalo, Wright, Jonathan, Verweij, Walter, Koutsovoulos, Georgios, Yoshida, Kentaro, Hosoya, Tsuyoshi, Williamson, Louisa, Jennings, Philip, Ioos, Renaud, Husson, Claude, Hietala, Ari M., Vivian-Smith, Adam, Solheim, Halvor, MaClean, Dan, Fosker, Christine, Hall, Neil, Brown, James K. M., Swarbreck, David, Blaxter, Mark, Downie, J. Allan, Clark, Matthew D.

“…Accelerating international trade and climate change make pathogen spread an increasing concern. Hymenoscyphus fraxineus , the causal agent of ash dieback, is a…”
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