Search Results - "Clarke, Shannon M"

A high throughput single nucleotide polymorphism multiplex assay for parentage assignment in New Zealand sheep by Clarke, Shannon M, Henry, Hannah M, Dodds, Ken G, Jowett, Timothy W D, Manley, Tim R, Anderson, Rayna M, McEwan, John C

“…Accurate pedigree information is critical to animal breeding systems to ensure the highest rate of genetic gain and management of inbreeding. The abundance of…”
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Genetic parameters and genotype-by-environment interaction estimates for growth and feed efficiency related traits in Chinook salmon, Oncorhynchus tshawytscha, reared under low and moderate flow regimes by Prescott, Leteisha A, Scholtens, Megan R, Walker, Seumas P, Clarke, Shannon M, Dodds, Ken G, Miller, Matthew R, Semmens, Jayson M, Carter, Chris G, Symonds, Jane E

“…A genotype-by-environment (G × E) interaction is defined as genotypes responding differently to different environments. In salmonids, G × E interactions can…”
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SNPs for parentage testing and traceability in globally diverse breeds of sheep by Heaton, Michael P, Leymaster, Kreg A, Kalbfleisch, Theodore S, Kijas, James W, Clarke, Shannon M, McEwan, John, Maddox, Jillian F, Basnayake, Veronica, Petrik, Dustin T, Simpson, Barry, Smith, Timothy P L, Chitko-McKown, Carol G

“…DNA-based parentage determination accelerates genetic improvement in sheep by increasing pedigree accuracy. Single nucleotide polymorphism (SNP) markers can be…”
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Global Analysis of Transcription Start Sites in the New Ovine Reference Genome ( Oar rambouillet v1.0 ) by Salavati, Mazdak, Caulton, Alex, Clark, Richard, Gazova, Iveta, Smith, Timothy P L, Worley, Kim C, Cockett, Noelle E, Archibald, Alan L, Clarke, Shannon M, Murdoch, Brenda M, Clark, Emily L

“…The overall aim of the Ovine FAANG project is to provide a comprehensive annotation of the new highly contiguous sheep reference genome sequence ( ). Mapping…”
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Developing Successful Breeding Programs for New Zealand Aquaculture: A Perspective on Progress and Future Genomic Opportunities by Symonds, Jane E, Clarke, Shannon M, King, Nick, Walker, Seumas P, Blanchard, Brian, Sutherland, David, Roberts, Rodney, Preece, Mark A, Tate, Mike, Buxton, Peter, Dodds, Ken G

“…Over the past 40 years New Zealand (NZ) aquaculture has grown into a significant primary industry. Tonnage is small on a global scale, but the industry has…”
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Application of Low Coverage Genotyping by Sequencing in Selectively Bred Arctic Charr ( Salvelinus alpinus ) by Palaiokostas, Christos, Clarke, Shannon M, Jeuthe, Henrik, Brauning, Rudiger, Bilton, Timothy P, Dodds, Ken G, McEwan, John C, De Koning, Dirk-Jan

“…Arctic charr ( ) is a species of high economic value for the aquaculture industry, and of high ecological value due to its Holarctic distribution in both…”
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Salicylate accumulation inhibits growth at chilling temperature in Arabidopsis by Scott, I.M, Clarke, S.M, Wood, J.E, Mur, L.A.J

“…The growth of Arabidopsis plants in chilling conditions could be related to their levels of salicylic acid (SA). Plants with the SA hydroxylase NahG transgene…”
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Exclusion and Genomic Relatedness Methods for Assignment of Parentage Using Genotyping-by-Sequencing Data by Dodds, Ken G, McEwan, John C, Brauning, Rudiger, van Stijn, Tracey C, Rowe, Suzanne J, McEwan, K Mary, Clarke, Shannon M

“…Genotypes are often used to assign parentage in agricultural and ecological settings. Sequencing can be used to obtain genotypes but does not provide…”
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The Use of “Genotyping-by-Sequencing” to Recover Shared Genealogy in Genetically Diverse Eucalyptus Populations by Jaroslav Klápště, Rachael L. Ashby, Emily J. Telfer, Natalie J. Graham, Heidi S. Dungey, Rudiger Brauning, Shannon M. Clarke, Ken G. Dodds

“…The recovery of genealogy in both natural and captive populations is critical for any decision in the management of genetic resources. It allows for the…”
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Construction of relatedness matrices using genotyping-by-sequencing data by Dodds, Ken G, McEwan, John C, Brauning, Rudiger, Anderson, Rayna M, van Stijn, Tracey C, Kristjánsson, Theodor, Clarke, Shannon M

“…Genotyping-by-sequencing (GBS) is becoming an attractive alternative to array-based methods for genotyping individuals for a large number of single nucleotide…”
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Jasmonates act with salicylic acid to confer basal thermotolerance in Arabidopsis thaliana by Clarke, Shannon M., Cristescu, Simona M., Miersch, Otto, Harren, Frans J. M., Wasternack, Claus, Mur, Luis A. J.

“…The cpr5-1 Arabidopsis thaliana mutant exhibits constitutive activation of salicylic acid (SA), jasmonic acid (JA) and ethylene (ET) signalling pathways and…”
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Linkage Disequilibrium Estimation in Low Coverage High-Throughput Sequencing Data by Bilton, Timothy P, McEwan, John C, Clarke, Shannon M, Brauning, Rudiger, van Stijn, Tracey C, Rowe, Suzanne J, Dodds, Ken G

“…High-throughput sequencing methods that multiplex a large number of individuals have provided a cost-effective approach for discovering genome-wide genetic…”
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Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population by Ventura, Ricardo V, Miller, Stephen P, Dodds, Ken G, Auvray, Benoit, Lee, Michael, Bixley, Matthew, Clarke, Shannon M, McEwan, John C

“…Genotype imputation is a key element of the implementation of genomic selection within the New Zealand sheep industry, but many factors can influence…”
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Development of Epigenetic Clocks for Key Ruminant Species by Caulton, Alex, Dodds, Ken G, McRae, Kathryn M, Couldrey, Christine, Horvath, Steve, Clarke, Shannon M

“…Robust biomarkers of chronological age have been developed in humans and model mammalian species such as rats and mice using DNA methylation data. The concept…”
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Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps by Prieur, Vincent, Clarke, Shannon M, Brito, Luiz F, McEwan, John C, Lee, Michael A, Brauning, Rudiger, Dodds, Ken G, Auvray, Benoît

“…Investments in genetic selection have played a major role in the New Zealand sheep industry competitiveness. Selection may erode genetic diversity, which is a…”
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Genetic variation in skin traits in New Zealand lambs by McRae, Kathryn M, Cooper, Sue M, McEwan, John C, Anderson, Rayna, Bain, Wendy E, Baird, Hayley J, Dodds, Ken G, Clarke, Shannon M, Pickering, Natalie K, Holmes, Geoff

“…BACKGROUND This study explored the genetic variability in the New Zealand sheep population for economically important skin traits. Skins were collected at…”
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Genome-wide association study of lung lesions and pleurisy in New Zealand lambs by McRae, Kathryn M, Rowe, Suzanne J, Baird, Hayley J, Bixley, Matthew J, Clarke, Shannon M

“…Pneumonia is an important issue for sheep production, leading to reduced growth rate and a predisposition to pleurisy. The objective of this study was to…”
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Across‐country genomic predictions in Norwegian and New Zealand Composite sheep populations with similar development history by Oliveira, Hinayah Rojas de, McEwan, John C., Jakobsen, Jette H., Blichfeldt, Thor, Meuwissen, Theo H. E., Pickering, Natalie K., Clarke, Shannon M., Brito, Luiz F.

“…The goal of this study was to assess the feasibility of across‐country genomic predictions in Norwegian White Sheep (NWS) and New Zealand Composite (NZC) sheep…”
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Salicylic acid dependent signaling promotes basal thermotolerance but is not essential for acquired thermotolerance in Arabidopsis thaliana by Clarke, Shannon M., Mur, Luis A. J., Wood, Jacqueline E., Scott, Ian M.

“…Summary Salicylic acid (SA) is reported to protect plants from heat shock (HS), but insufficient is known about its role in thermotolerance or how this relates…”
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Genotyping-by-sequencing of pooled drone DNA for the management of living honeybee (Apis mellifera) queens in commercial beekeeping operations in New Zealand by Petersen, Gertje E. L., Fennessy, Peter F., Van Stijn, Tracey C., Clarke, Shannon M., Dodds, Ken G., Dearden, Peter K.

“…The absence of a full pedigree can hinder selective breeding efforts. In honeybees, definitive maternity and especially paternity of queens is difficult to…”
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