Search Results - "Clamp, M."

JPred: a consensus secondary structure prediction server by Cuff, J.A, Clamp, M.E, Siddiqui, A.S, Finlay, M, Barton, G.J

“…An interactive protein secondary structure prediction Internet server is presented. The server allows a single sequence or multiple alignment to be submitted,…”
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The Ensembl genome database project by Hubbard, T, Barker, D, Birney, E, Cameron, G, Chen, Y, Clark, L, Cox, T, Cuff, J, Curwen, V, Down, T, Durbin, R, Eyras, E, Gilbert, J, Hammond, M, Huminiecki, L, Kasprzyk, A, Lehvaslaiho, H, Lijnzaad, P, Melsopp, C, Mongin, E, Pettett, R, Pocock, M, Potter, S, Rust, A, Schmidt, E, Searle, S, Slater, G, Smith, J, Spooner, W, Stabenau, A, Stalker, J, Stupka, E, Ureta-Vidal, A, Vastrik, I, Clamp, M

“…The Ensembl (http://www.ensembl.org/) database project provides a bioinformatics framework to organise biology around the sequences of large genomes. It is a…”
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Ensembl 2005 by Hubbard, T., Andrews, D., Caccamo, M., Cameron, G., Chen, Y., Clamp, M., Clarke, L., Coates, G., Cox, T., Cunningham, F., Curwen, V., Cutts, T., Down, T., Durbin, R., Fernandez-Suarez, X. M., Gilbert, J., Hammond, M., Herrero, J., Hotz, H., Howe, K., Iyer, V., Jekosch, K., Kahari, A., Kasprzyk, A., Keefe, D., Keenan, S., Kokocinsci, F., London, D., Longden, I., McVicker, G., Melsopp, C., Meidl, P., Potter, S., Proctor, G., Rae, M., Rios, D., Schuster, M., Searle, S., Severin, J., Slater, G., Smedley, D., Smith, J., Spooner, W., Stabenau, A., Stalker, J., Storey, R., Trevanion, S., Ureta-Vidal, A., Vogel, J., White, S., Woodwark, C., Birney, E.

“…The Ensembl (http://www.ensembl.org/) project provides a comprehensive and integrated source of annotation of large genome sequences. Over the last year the…”
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The DNA sequence and analysis of human chromosome 6 by Mungall, A. J, Beck, S, Palmer, S. A, Edwards, C. A, Jones, M. C, Horton, R, Scott, C. E, Clamp, M. E, Milne, S, Almeida, J. P, Babbage, A. K, Bagguley, C. L, Bailey, J, Banerjee, R, Barker, D. J, Barlow, K. F, Beasley, H, Beasley, O, Bird, C. P, Blakey, S, Bray-Allen, S, Brown, A. J, Brown, J. Y, Burton, J, Chapman, J. C, Clark, S. Y, Clark, G, Clee, C. M, Clegg, S, Collier, R. E, Collins, J. E, Corby, N. R, Coville, G. J, Earthrowl, M. E, Ellington, A. E, Evans, K. A, Francis, M. D, Garner, P, Garnett, J, Gillson, C. J, Grafham, D. V, Grant, M, Gribble, S, Griffiths, C, Hall, R, Halls, K. S, Heathcott, R, Howden, P. J, Howell, G. R, Huckle, E, Humphray, S. J, Humphries, M. D, Hunt, A. R, Johnson, C. M, Joy, A. A, Kay, M, Kimberley, A. M, Laird, G. K, Lawlor, S, Leongamornlert, D. A, Lloyd, C. R, Lovell, J, Mashreghi-Mohammadi, M, Maslen, G. L, McCann, O. T, McLaren, S. J, McLay, K, McMurray, A, Novik, K. L, Overton-Larty, E. K, Parker, A, Patel, R, Phillimore, B, Phillips, S, Plumb, R. W, Ranby, S. A, Rice, C. M, Sheridan, E, Skuce, C. D, Smith, S, Spraggon, L, Squares, S. L, Tamlyn-Hall, G, Tester, J, Thorpe, A, Tromans, A, Wallis, J. M, West, A. P, White, S. S, Whitehead, S. L, Whittaker, H, Wild, A, Wilmer, T. E, Wood, J. M, Wray, P. W, Younger, R. M, Coulson, A, Hubbard, T, Sulston, J. E, Rogers, J

“…Chromosome 6 is a metacentric chromosome that constitutes about 6% of the human genome. The finished sequence comprises 166,880,988 base pairs, representing…”
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Ensembl 2002: accommodating comparative genomics by Clamp, M., Andrews, D., Barker, D., Bevan, P., Cameron, G., Chen, Y., Clark, L., Cox, T., Cuff, J., Curwen, V., Down, T., Durbin, R., Eyras, E., Gilbert, J., Hammond, M., Hubbard, T., Kasprzyk, A., Keefe, D., Lehvaslaiho, H., Iyer, V., Melsopp, C., Mongin, E., Pettett, R., Potter, S., Rust, A., Schmidt, E., Searle, S., Slater, G., Smith, J., Spooner, W., Stabenau, A., Stalker, J., Stupka, E., Ureta-Vidal, A., Vastrik, I., Birney, E.

“…The Ensembl (http://www.ensembl.org/) database project provides a bioinformatics framework to organise biology around the sequences of large genomes. It is a…”
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Ensembl 2004 by Birney, E., Andrews, D., Bevan, P., Caccamo, M., Cameron, G., Chen, Y., Clarke, L., Coates, G., Cox, T., Cuff, J., Curwen, V., Cutts, T., Down, T., Durbin, R., Eyras, E., Fernandez‐Suarez, X. M., Gane, P., Gibbins, B., Gilbert, J., Hammond, M., Hotz, H., Iyer, V., Kahari, A., Jekosch, K., Kasprzyk, A., Keefe, D., Keenan, S., Lehvaslaiho, H., McVicker, G., Melsopp, C., Meidl, P., Mongin, E., Pettett, R., Potter, S., Proctor, G., Rae, M., Searle, S., Slater, G., Smedley, D., Smith, J., Spooner, W., Stabenau, A., Stalker, J., Storey, R., Ureta‐Vidal, A., Woodwark, C., Clamp, M., Hubbard, T.

“…The Ensembl (http://www.ensembl.org/) database project provides a bioinformatics framework to organize biology around the sequences of large genomes. It is a…”
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A randomised controlled trial of general practitioner safety advice for families with children under 5 years by Clamp, Margaret, Kendrick, Denise

“…Abstract Objective: To assess effectiveness of general practitioner advice about child safety, and provision of low cost safety equipment to low income…”
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The DNA sequence and analysis of human chromosome 13 by Matthews, L. H, Burton, J, Ashurst, J. L, Howe, K. L, Ashcroft, K. J, Beare, D. M, Hunt, S. E, Griffiths-Jones, S, Jones, M. C, Keenan, S. J, Oliver, K, Scott, C. E, Almeida, J. P, Ambrose, K. D, Andrews, D. T, Babbage, A. K, Bailey, J, Bannerjee, R, Bates, K, Bray-Allen, S, Brown, A. J, Brown, J. Y, Burrill, W, Carter, N. P, Chapman, J. C, Clamp, M. E, Clark, S. Y, Clarke, G, Clee, C. M, Clegg, S. C. M, Cobley, V, Collins, J. E, Corby, N, Coville, G. J, Deloukas, P, Dunham, I, Dunn, M, Ellington, A. G, Faulkner, L, Frankish, A. G, Frankland, J, French, L, Garner, P, Garnett, J, Gilbert, J. G. R, Gilson, C. J, Ghori, J, Grafham, D. V, Gribble, S. M, Griffiths, C, Hammond, S, Harley, J. L, Heath, P. D, Howden, P. J, Huckle, E. J, Hunt, A. R, Johnson, D, Kay, M, Kimberley, A. M, King, A, Langford, C. J, Leongamornlert, D. A, Lloyd, D. M, Lloyd, C, Loveland, J. E, Lovell, J, Mashreghi-Mohammadi, M, McLaren, S. J, McMurray, A, Milne, S, Moore, M. J. F, Nickerson, T, Palmer, S. A, Pearce, A. V, Phillimore, B, Porter, K. M, Rice, C. M, Searle, S, Shownkeen, R, Skuce, C. D, Smith, M, Steward, C. A, Sycamore, N, Tester, J, Thomas, D. W, Tracey, A, Tubby, B, Wall, M, Wallis, J. M, West, A. P, Whitehead, S. L, Wray, P. W, Wright, M. W, Young, L, Hubbard, T, Sulston, J. E, Beck, S, Bentley, D. R, Rogers, J, Ross, M. T

“…Chromosome 13 is the largest acrocentric human chromosome. It carries genes involved in cancer including the breast cancer type 2 (BRCA2) and retinoblastoma…”
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Fibroadenoma occurring in supernumerary breast tissue by Atwal, G S S, O'Connor, S R, Clamp, M, Elston, C W

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Mining the draft human genome by Birney, Ewan, Bateman, Alex, Clamp, Michele E, Hubbard, Tim J

“…Now that the draft human genome sequence is available, everyone wants to be able to use it. However, we have perhaps become complacent about our ability to…”
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GeneWise and Genomewise by Birney, Ewan, Clamp, Michele, Durbin, Richard

“…We present two algorithms in this paper: GeneWise, which predicts gene structure using similar protein sequences, and Genomewise, which provides a gene…”
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ProtEST: protein multiple sequence alignments from expressed sequence tags by Cuff, James A., Birney, Ewan, Clamp, Michele E., Barton, Geoffrey J.

“…Motivation: An automatic sequence searching method (ProtEST) is described which constructs multiple protein sequence alignments from protein sequences and…”
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The Jalview Java alignment editor by Clamp, Michele, Cuff, James, Searle, Stephen M., Barton, Geoffrey J.

“…Multiple sequence alignment remains a crucial method for understanding the function of groups of related nucleic acid and protein sequences. However, it is…”
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The Ensembl automatic gene annotation system by Curwen, Val, Eyras, Eduardo, Andrews, T Daniel, Clarke, Laura, Mongin, Emmanuel, Searle, Steven M J, Clamp, Michele

“…As more genomes are sequenced, there is an increasing need for automated first-pass annotation which allows timely access to important genomic information. The…”
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The genome sequence of the malaria mosquito Anopheles gambiae by Holt, Robert A, Subramanian, G Mani, Halpern, Aaron, Sutton, Granger G, Charlab, Rosane, Nusskern, Deborah R, Wincker, Patrick, Clark, Andrew G, Ribeiro, José M C, Wides, Ron, Salzberg, Steven L, Loftus, Brendan, Yandell, Mark, Majoros, William H, Rusch, Douglas B, Lai, Zhongwu, Kraft, Cheryl L, Abril, Josep F, Anthouard, Veronique, Arensburger, Peter, Atkinson, Peter W, Baden, Holly, de Berardinis, Veronique, Baldwin, Danita, Benes, Vladimir, Biedler, Jim, Blass, Claudia, Bolanos, Randall, Boscus, Didier, Barnstead, Mary, Cai, Shuang, Center, Angela, Chaturverdi, Kabir, Christophides, George K, Chrystal, Mathew A, Clamp, Michele, Cravchik, Anibal, Curwen, Val, Dana, Ali, Delcher, Art, Dew, Ian, Evans, Cheryl A, Flanigan, Michael, Grundschober-Freimoser, Anne, Friedli, Lisa, Gu, Zhiping, Guan, Ping, Guigo, Roderic, Hillenmeyer, Maureen E, Hladun, Susanne L, Hogan, James R, Hong, Young S, Hoover, Jeffrey, Jaillon, Olivier, Ke, Zhaoxi, Kodira, Chinnappa, Kokoza, Elena, Koutsos, Anastasios, Letunic, Ivica, Levitsky, Alex, Liang, Yong, Lin, Jhy-Jhu, Lobo, Neil F, Lopez, John R, Malek, Joel A, McIntosh, Tina C, Meister, Stephan, Miller, Jason, Mobarry, Clark, Mongin, Emmanuel, Murphy, Sean D, O'Brochta, David A, Pfannkoch, Cynthia, Qi, Rong, Regier, Megan A, Remington, Karin, Shao, Hongguang, Sharakhova, Maria V, Sitter, Cynthia D, Shetty, Jyoti, Smith, Thomas J, Strong, Renee, Sun, Jingtao, Thomasova, Dana, Ton, Lucas Q, Topalis, Pantelis, Tu, Zhijian, Unger, Maria F, Walenz, Brian, Wang, Aihui, Wang, Jian, Wang, Mei, Wang, Xuelan, Woodford, Kerry J, Wortman, Jennifer R, Wu, Martin, Yao, Alison, Zdobnov, Evgeny M, Zhang, Hongyu, Zhao, Qi

“…Anopheles gambiae is the principal vector of malaria, a disease that afflicts more than 500 million people and causes more than 1 million deaths each year…”
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Lattice models of protein folding by Brass, A, Fiszer, A, Clamp, M

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Apollo: a sequence annotation editor by Lewis, S E, Searle, S M J, Harris, N, Gibson, M, Lyer, V, Richter, J, Wiel, C, Bayraktaroglu, L, Birney, E, Crosby, M A, Kaminker, J S, Matthews, B B, Prochnik, S E, Smithy, C D, Tupy, J L, Rubin, G M, Misra, S, Mungall, C J, Clamp, M E

“…The well-established inaccuracy of purely computational methods for annotating genome sequences necessitates an interactive tool to allow biological experts to…”
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An overview of Ensembl by Birney, Ewan, Andrews, T Daniel, Bevan, Paul, Caccamo, Mario, Chen, Yuan, Clarke, Laura, Coates, Guy, Cuff, James, Curwen, Val, Cutts, Tim, Down, Thomas, Eyras, Eduardo, Fernandez-Suarez, Xose M, Gane, Paul, Gibbins, Brian, Gilbert, James, Hammond, Martin, Hotz, Hans-Rudolf, Iyer, Vivek, Jekosch, Kerstin, Kahari, Andreas, Kasprzyk, Arek, Keefe, Damian, Keenan, Stephen, Lehvaslaiho, Heikki, McVicker, Graham, Melsopp, Craig, Meidl, Patrick, Mongin, Emmanuel, Pettett, Roger, Potter, Simon, Proctor, Glenn, Rae, Mark, Searle, Steve, Slater, Guy, Smedley, Damian, Smith, James, Spooner, Will, Stabenau, Arne, Stalker, James, Storey, Roy, Ureta-Vidal, Abel, Woodwark, K Cara, Cameron, Graham, Durbin, Richard, Cox, Anthony, Hubbard, Tim, Clamp, Michele

“…Ensembl (http://www.ensembl.org/) is a bioinformatics project to organize biological information around the sequences of large genomes. It is a comprehensive…”
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The Ensembl core software libraries by Stabenau, Arne, McVicker, Graham, Melsopp, Craig, Proctor, Glenn, Clamp, Michele, Birney, Ewan

“…Systems for managing genomic data must store a vast quantity of information. Ensembl stores these data in several MySQL databases. The core software libraries…”
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Genome sequence, comparative analysis and haplotype structure of the domestic dog by Lindblad-Toh, K, Wade, C.M, Mikkelsen, T.S, Karlsson, E.K, Jaffe, D.B, Kamal, M, Clamp, M, Chang, J.L, Kulbokas, E.J. III, Zody, M.C

“…Here we report a high-quality draft genome sequence of the domestic dog (Canis familiaris), together with a dense map of single nucleotide polymorphisms (SNPs)…”
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