Search Results - "Claesson, Marcus"

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis by Clooney, Adam G, Fouhy, Fiona, Sleator, Roy D, O' Driscoll, Aisling, Stanton, Catherine, Cotter, Paul D, Claesson, Marcus J

“…Rapid advancements in sequencing technologies along with falling costs present widespread opportunities for microbiome studies across a vast and diverse array…”
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Diversity of bifidobacteria within the infant gut microbiota by Turroni, Francesca, Peano, Clelia, Pass, Daniel A, Foroni, Elena, Severgnini, Marco, Claesson, Marcus J, Kerr, Colm, Hourihane, Jonathan, Murray, Deirdre, Fuligni, Fabio, Gueimonde, Miguel, Margolles, Abelardo, De Bellis, Gianluca, O'Toole, Paul W, van Sinderen, Douwe, Marchesi, Julian R, Ventura, Marco

“…The human gastrointestinal tract (GIT) represents one of the most densely populated microbial ecosystems studied to date. Although this microbial consortium…”
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Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment by Marcos-Zambrano, Laura Judith, Karaduzovic-Hadziabdic, Kanita, Loncar Turukalo, Tatjana, Przymus, Piotr, Trajkovik, Vladimir, Aasmets, Oliver, Berland, Magali, Gruca, Aleksandra, Hasic, Jasminka, Hron, Karel, Klammsteiner, Thomas, Kolev, Mikhail, Lahti, Leo, Lopes, Marta B, Moreno, Victor, Naskinova, Irina, Org, Elin, Paciência, Inês, Papoutsoglou, Georgios, Shigdel, Rajesh, Stres, Blaz, Vilne, Baiba, Yousef, Malik, Zdravevski, Eftim, Tsamardinos, Ioannis, Carrillo de Santa Pau, Enrique, Claesson, Marcus J, Moreno-Indias, Isabel, Truu, Jaak

“…The number of microbiome-related studies has notably increased the availability of data on human microbiome composition and function. These studies provide the…”
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Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine by Claesson, M.J, O'Sullivan, O, Wang, Q, Nikkilä, J, Marchesi, J.R, Smidt, H, Vos, W.M. de, Ross, R.P, O'Toole, P.W

“…Variations in the composition of the human intestinal microbiota are linked to diverse health conditions. High-throughput molecular technologies have recently…”
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Gut microbiome, big data and machine learning to promote precision medicine for cancer by Cammarota, Giovanni, Ianiro, Gianluca, Ahern, Anna, Carbone, Carmine, Temko, Andriy, Claesson, Marcus J., Gasbarrini, Antonio, Tortora, Giampaolo

“…The gut microbiome has been implicated in cancer in several ways, as specific microbial signatures are known to promote cancer development and influence…”
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16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform by Fouhy, Fiona, Clooney, Adam G, Stanton, Catherine, Claesson, Marcus J, Cotter, Paul D

“…Next-generation sequencing platforms have revolutionised our ability to investigate the microbiota composition of complex environments, frequently through 16S…”
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Tumour-associated and non-tumour-associated microbiota in colorectal cancer by Flemer, Burkhardt, Lynch, Denise B, Brown, Jillian M R, Jeffery, Ian B, Ryan, Feargal J, Claesson, Marcus J, O'Riordain, Micheal, Shanahan, Fergus, O'Toole, Paul W

“…A signature that unifies the colorectal cancer (CRC) microbiota across multiple studies has not been identified. In addition to methodological variance,…”
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A clinician's guide to microbiome analysis by Claesson, Marcus J., Clooney, Adam G., O'Toole, Paul W.

“…Key Points Complex communities of microorganisms live on and in the human body, and variations in the composition and function of these communities are…”
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SPINGO: a rapid species-classifier for microbial amplicon sequences by Allard, Guy, Ryan, Feargal J, Jeffery, Ian B, Claesson, Marcus J

“…Taxonomic classification is a corner stone for the characterisation and comparison of microbial communities. Currently, most existing methods are either slow,…”
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Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions by Claesson, Marcus J, Wang, Qiong, O'Sullivan, Orla, Greene-Diniz, Rachel, Cole, James R, Ross, R. Paul, O'Toole, Paul W

“…High-throughput molecular technologies can profile microbial communities at high resolution even in complex environments like the intestinal microbiota. Recent…”
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Ranking microbiome variance in inflammatory bowel disease: a large longitudinal intercontinental study by Clooney, Adam G, Eckenberger, Julia, Laserna-Mendieta, Emilio, Sexton, Kathryn A, Bernstein, Matthew T, Vagianos, Kathy, Sargent, Michael, Ryan, Feargal J, Moran, Carthage, Sheehan, Donal, Sleator, Roy D, Targownik, Laura E, Bernstein, Charles N, Shanahan, Fergus, Claesson, Marcus J

“…The microbiome contributes to the pathogenesis of inflammatory bowel disease (IBD) but the relative contribution of different lifestyle and environmental…”
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Diversity of bacteria populations associated with different thallus regions of the brown alga Laminaria digitata by Ihua, Maureen W, FitzGerald, Jamie A, Guihéneuf, Freddy, Jackson, Stephen A, Claesson, Marcus J, Stengel, Dagmar B, Dobson, Alan D W

“…Stipitate kelp species such as Laminaria digitata dominate most cold-water subtidal rocky shores and form underwater forests which are among the most…”
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Categorization of the gut microbiota: enterotypes or gradients? by Jeffery, Ian B., Claesson, Marcus J., O'Toole, Paul W., Shanahan, Fergus

“…Grouping the microbiota of individual subjects into compositional categories, or enterotypes, based on the dominance of certain genera may have oversimplified…”
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Gut microbiota: Changes throughout the lifespan from infancy to elderly by O'Toole, Paul W., Claesson, Marcus J.

“…Our understanding of the composition and function of the human gut microbiota has improved dramatically in recent years. In this review, major milestones along…”
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Microbes & neurodevelopment – Absence of microbiota during early life increases activity-related transcriptional pathways in the amygdala by Stilling, Roman M, Ryan, Feargal J, Hoban, Alan E, Shanahan, Fergus, Clarke, Gerard, Claesson, Marcus J, Dinan, Timothy G, Cryan, John F

“…Highlights • The amygdala is an important brain region for emotional behaviour, such as social life and anxiety, and is activated by social interaction. •…”
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Composition, variability, and temporal stability of the intestinal microbiota of the elderly by Claesson, Marcus J, Cusack, Siobhán, O'Sullivan, Orla, Greene-Diniz, Rachel, de Weerd, Heleen, Flannery, Edel, Marchesi, Julian R, Falush, Daniel, Dinan, Timothy, Fitzgerald, Gerald, Stanton, Catherine, van Sinderen, Douwe, O'Connor, Michael, Harnedy, Norma, O'Connor, Kieran, Henry, Colm, O'Mahony, Denis, Fitzgerald, Anthony P, Shanahan, Fergus, Twomey, Cillian, Hill, Colin, Ross, R. Paul, O'Toole, Paul W

“…Alterations in the human intestinal microbiota are linked to conditions including inflammatory bowel disease, irritable bowel syndrome, and obesity. The…”
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An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota by Jeffery, Ian B, O'Toole, Paul W, Öhman, Lena, Claesson, Marcus J, Deane, Jennifer, Quigley, Eamonn M M, Simrén, Magnus

“…Irritable bowel syndrome (IBS) is a common functional gastrointestinal disorder that may be triggered by enteric pathogens and has also been linked to…”
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The Athlete Gut Microbiome and its Relevance to Health and Performance: A Review by O’Brien, Marcus T., O’Sullivan, Orla, Claesson, Marcus J., Cotter, Paul D.

“…The human gut microbiome is a complex ecosystem of microorganisms that play an important role in human health, influencing functions such as vitamin uptake,…”
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Making Sense of … the Microbiome in Psychiatry by Bastiaanssen, Thomaz F S, Cowan, Caitlin S M, Claesson, Marcus J, Dinan, Timothy G, Cryan, John F

“…Microorganisms can be found almost anywhere, including in and on the human body. The collection of microorganisms associated with a certain location is called…”
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Paediatric Inflammatory Bowel Disease and its Relationship with the Microbiome by Fitzgerald, Rachel S., Sanderson, Ian R., Claesson, Marcus J.

“…Paediatric inflammatory bowel disease (IBD) is a chronic inflammatory disorder of the digestive tract, comprising of Crohn’s disease (CD), ulcerative colitis…”
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