Search Results - "Chu, Rosalie K"

Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover by Stegen, James C., Fredrickson, James K., Wilkins, Michael J., Konopka, Allan E., Nelson, William C., Arntzen, Evan V., Chrisler, William B., Chu, Rosalie K., Danczak, Robert E., Fansler, Sarah J., Kennedy, David W., Resch, Charles T., Tfaily, Malak

“…Environmental transitions often result in resource mixtures that overcome limitations to microbial metabolism, resulting in biogeochemical hotspots and…”
Get full text

Using metacommunity ecology to understand environmental metabolomes by Danczak, Robert E., Chu, Rosalie K., Fansler, Sarah J., Goldman, Amy E., Graham, Emily B., Tfaily, Malak M., Toyoda, Jason, Stegen, James C.

“…Environmental metabolomes are fundamentally coupled to microbially-linked biogeochemical processes within ecosystems. However, significant gaps exist in our…”
Get full text

Sequential extraction protocol for organic matter from soils and sediments using high resolution mass spectrometry by Tfaily, Malak M., Chu, Rosalie K., Toyoda, Jason, Tolić, Nikola, Robinson, Errol W., Paša-Tolić, Ljiljana, Hess, Nancy J.

“…A vast number of organic compounds are present in soil organic matter (SOM) and play an important role in the terrestrial carbon cycle, facilitate interactions…”
Get full text

Intracellular pathways for lignin catabolism in white-rot fungi by del Cerro, Carlos, Erickson, Erika, Dong, Tao, Wong, Allison R., Eder, Elizabeth K., Purvine, Samuel O., Mitchell, Hugh D., Weitz, Karl K., Markillie, Lye Meng, Burnet, Meagan C., Hoyt, David W., Chu, Rosalie K., Cheng, Jan-Fang, Ramirez, Kelsey J., Katahira, Rui, Xiong, Wei, Himmel, Michael E., Subramanian, Venkataramanan, Linger, Jeffrey G., Salvachúa, Davinia

“…Lignin is a biopolymer found in plant cell walls that accounts for 30% of the organic carbon in the biosphere. White-rot fungi (WRF) are considered the most…”
Get full text

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology by Stegen, James C., Johnson, Tim, Fredrickson, James K., Wilkins, Michael J., Konopka, Allan E., Nelson, William C., Arntzen, Evan V., Chrisler, William B., Chu, Rosalie K., Fansler, Sarah J., Graham, Emily B., Kennedy, David W., Resch, Charles T., Tfaily, Malak, Zachara, John

“…The hyporheic corridor (HC) encompasses the river–groundwater continuum, where the mixing of groundwater (GW) with river water (RW) in the HC can stimulate…”
Get full text

Interactions between microbial diversity and substrate chemistry determine the fate of carbon in soil by Raczka, Nanette C., Piñeiro, Juan, Tfaily, Malak M., Chu, Rosalie K., Lipton, Mary S., Pasa-Tolic, Ljiljana, Morrissey, Ember, Brzostek, Edward

“…Microbial decomposition drives the transformation of plant-derived substrates into microbial products that form stable soil organic matter (SOM). Recent…”
Get full text

Endophyte-Promoted Phosphorus Solubilization in Populus by Varga, Tamas, Hixson, Kim K., Ahkami, Amir H., Sher, Andrew W., Barnes, Morgan E., Chu, Rosalie K., Battu, Anil K., Nicora, Carrie D., Winkler, Tanya E., Reno, Loren R., Fakra, Sirine C., Antipova, Olga, Parkinson, Dilworth Y., Hall, Jackson R., Doty, Sharon L.

“…Phosphorus is an important plant nutrient, but in soils the majority of phosphorus, present in the form of a phosphate, forms metal complexes in soil making it…”
Get full text

Linkages Between Mineral Element Composition of Soils and Sediments With Hyporheic Zone Dissolved Organic Matter Chemistry Across the Contiguous United States by Roebuck, J. Alan, Rod, Kenton A., Garayburu‐Caruso, Vanessa A., Chu, Rosalie K., Goldman, Amy E., Renteria, Lupita, Taylor, Micah, Stegen, James C.

“…The hyporheic zone is a hotspot for biogeochemical cycling where interactions with mineral metals preserve the release and biodegradation of organic matter…”
Get full text

Root exudate composition reflects drought severity gradient in blue grama (Bouteloua gracilis) by Ulrich, Danielle E. M., Clendinen, Chaevien S., Alongi, Franklin, Mueller, Rebecca C., Chu, Rosalie K., Toyoda, Jason, Gallegos-Graves, La Verne, Goemann, Hannah M., Peyton, Brent, Sevanto, Sanna, Dunbar, John

“…Plant survival during environmental stress greatly affects ecosystem carbon (C) cycling, and plant–microbe interactions are central to plant stress survival…”
Get full text

Indexing Permafrost Soil Organic Matter Degradation Using High-Resolution Mass Spectrometry by Mann, Benjamin F, Chen, Hongmei, Herndon, Elizabeth M, Chu, Rosalie K, Tolic, Nikola, Portier, Evan F, Roy Chowdhury, Taniya, Robinson, Errol W, Callister, Stephen J, Wullschleger, Stan D, Graham, David E, Liang, Liyuan, Gu, Baohua

“…Microbial degradation of soil organic matter (SOM) is a key process for terrestrial carbon cycling, although the molecular details of these transformations…”
Get full text

Biogenic, urban, and wildfire influences on the molecular composition of dissolved organic compounds in cloud water by Cook, Ryan D, Lin, Ying-Hsuan, Peng, Zhuoyu, Boone, Eric, Chu, Rosalie K, Dukett, James E, Gunsch, Matthew J, Zhang, Wuliang, Tolic, Nikola, Laskin, Alexander, Pratt, Kerri A

“…Organic aerosol formation and transformation occurs within aqueous aerosol and cloud droplets, yet little is known about the composition of high molecular…”
Get full text

Utilizing a Robotic Sprayer for High Lateral and Mass Resolution MALDI FT-ICR MSI of Microbial Cultures by Anderton, Christopher R., Chu, Rosalie K., Tolić, Nikola, Creissen, Alain, Paša-Tolić, Ljiljana

“…The ability to visualize biochemical interactions between microbial communities using MALDI MSI has provided tremendous insights into a variety of biological…”
Get full text

Inferring the Contribution of Microbial Taxa and Organic Matter Molecular Formulas to Ecological Assembly by Danczak, Robert E, Sengupta, Aditi, Fansler, Sarah J, Chu, Rosalie K, Garayburu-Caruso, Vanessa A, Renteria, Lupita, Toyoda, Jason, Wells, Jacqueline, Stegen, James C

“…Understanding the mechanisms underlying the assembly of communities has long been the goal of many ecological studies. While several studies have evaluated…”
Get full text

MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses by Nakayasu, Ernesto S, Nicora, Carrie D, Sims, Amy C, Burnum-Johnson, Kristin E, Kim, Young-Mo, Kyle, Jennifer E, Matzke, Melissa M, Shukla, Anil K, Chu, Rosalie K, Schepmoes, Athena A, Jacobs, Jon M, Baric, Ralph S, Webb-Robertson, Bobbie-Jo, Smith, Richard D, Metz, Thomas O

“…Integrative multi-omics analyses can empower more effective investigation and complete understanding of complex biological systems. Despite recent advances in…”
Get full text

Untargeted metabolomic profiling of Sphagnum fallax reveals novel antimicrobial metabolites by Fudyma, Jane D., Lyon, Jamee, AminiTabrizi, Roya, Gieschen, Hans, Chu, Rosalie K., Hoyt, David W., Kyle, Jennifer E., Toyoda, Jason, Tolic, Nikola, Heyman, Heino M., Hess, Nancy J., Metz, Thomas O., Tfaily, Malak M.

“…Sphagnum mosses dominate peatlands by employing harsh ecosystem tactics to prevent vascular plant growth and microbial degradation of these large carbon…”
Get full text

Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism by Staley, Christopher, Ferrieri, Abigail P, Tfaily, Malak M, Cui, Yaya, Chu, Rosalie K, Wang, Ping, Shaw, Jared B, Ansong, Charles K, Brewer, Heather, Norbeck, Angela D, Markillie, Meng, do Amaral, Fernanda, Tuleski, Thalita, Pellizzaro, Tomás, Agtuca, Beverly, Ferrieri, Richard, Tringe, Susannah G, Paša-Tolić, Ljiljana, Stacey, Gary, Sadowsky, Michael J

“…The circadian clock regulates plant metabolic functions and is an important component in plant health and productivity. Rhizosphere bacteria play critical…”
Get full text

Single-colony MALDI mass spectrometry imaging reveals spatial differences in metabolite abundance between natural and cultured Trichodesmium morphotypes by Romanowicz, Karl J, Zhang, Futing, Wang, Siyuan, Veličković, Dušan, Chu, Rosalie K, Shaked, Yeala, Boiteau, Rene M

“…, a globally significant N -fixing marine cyanobacterium, forms extensive surface blooms in nutrient-poor ocean regions. These blooms consist of a dynamic…”
Get full text

A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics by Tsai, Chia-Feng, Wang, Yi-Ting, Hsu, Chuan-Chih, Kitata, Reta Birhanu, Chu, Rosalie K., Velickovic, Marija, Zhao, Rui, Williams, Sarah M., Chrisler, William B., Jorgensen, Marda L., Moore, Ronald J., Zhu, Ying, Rodland, Karin D., Smith, Richard D., Wasserfall, Clive H., Shi, Tujin, Liu, Tao

“…Effective phosphoproteome of nanoscale sample analysis remains a daunting task, primarily due to significant sample loss associated with non-specific surface…”
Get full text

Using Macro- and Microscale Preservation in Vertebrate Fossils as Predictors for Molecular Preservation in Fluvial Environments by Colleary, Caitlin, O’Reilly, Shane, Dolocan, Andrei, Toyoda, Jason G., Chu, Rosalie K., Tfaily, Malak M., Hochella, Michael F., Nesbitt, Sterling J.

“…Exceptionally preserved fossils retain soft tissues and often the biomolecules that were present in an animal during its life. The majority of terrestrial…”
Get full text

Using Community Science to Reveal the Global Chemogeography of River Metabolomes by Garayburu-Caruso, Vanessa A, Danczak, Robert E, Stegen, James C, Renteria, Lupita, Mccall, Marcy, Goldman, Amy E, Chu, Rosalie K, Toyoda, Jason, Resch, Charles T, Torgeson, Joshua M, Wells, Jacqueline, Fansler, Sarah, Kumar, Swatantar, Graham, Emily B

“…River corridor metabolomes reflect organic matter (OM) processing that drives aquatic biogeochemical cycles. Recent work highlights the power of…”
Get full text