Search Results - "Christopher M. Austin"

Comparative mitogenomics of the Decapoda reveals evolutionary heterogeneity in architecture and composition by Tan, Mun Hua, Gan, Han Ming, Lee, Yin Peng, Bracken-Grissom, Heather, Chan, Tin-Yam, Miller, Adam D., Austin, Christopher M.

“…The emergence of cost-effective and rapid sequencing approaches has resulted in an exponential rise in the number of mitogenomes on public databases in recent…”
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Microbiome analysis of Pacific white shrimp gut and rearing water from Malaysia and Vietnam: implications for aquaculture research and management by Md Zoqratt, Muhammad Zarul Hanifah, Eng, Wilhelm Wei Han, Thai, Binh Thanh, Austin, Christopher M, Gan, Han Ming

“…Aquaculture production of the Pacific white shrimp is the largest in the world for crustacean species. Crucial to the sustainable global production of this…”
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Nanopore Long-Read Guided Complete Genome Assembly of Hydrogenophaga intermedia , and Genomic Insights into 4-Aminobenzenesulfonate, p -Aminobenzoic Acid and Hydrogen Metabolism in the Genus Hydrogenophaga by Gan, Han M, Lee, Yin P, Austin, Christopher M

“…We improved upon the previously reported draft genome of strain PBC, a 4-aminobenzenesulfonate-degrading bacterium, by supplementing the assembly with Nanopore…”
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A Giant Genome for a Giant Crayfish ( Cherax quadricarinatus ) With Insights Into cox1 Pseudogenes in Decapod Genomes by Tan, Mun Hua, Gan, Han Ming, Lee, Yin Peng, Grandjean, Frederic, Croft, Laurence J, Austin, Christopher M

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The NGS Magic Pudding: A Nanopore-Led Long-Read Genome Assembly for the Commercial Australian Freshwater Crayfish, Cherax destructor by Austin, Christopher M, Croft, Laurence J, Grandjean, Frederic, Gan, Han Ming

“…, the yabby, is an iconic Australian freshwater crayfish species, which, similar to other major invertebrate groups, is grossly under-represented in genomic…”
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The Pontastacus leptodactylus (Astacidae) Repeatome Provides Insight Into Genome Evolution and Reveals Remarkable Diversity of Satellite DNA by Boštjančić, Ljudevit Luka, Bonassin, Lena, Anušić, Lucija, Lovrenčić, Leona, Besendorfer, Višnja, Maguire, Ivana, Grandjean, Frederic, Austin, Christopher M, Greve, Carola, Hamadou, Alexander Ben, Mlinarec, Jelena

“…is a native European crayfish species found in both freshwater and brackish environments. It has commercial importance for fisheries and aquaculture…”
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De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from Illumina and Nanopore sequencing read by Austin, Christopher M., Tan, Mun Hua, Harrisson, Katherine A., Lee, Yin Peng, Croft, Laurence J., Sunnucks, Paul, Pavlova, Alexandra, Gan, Han Ming

“…One of the most iconic Australian fish is the Murray cod, Maccullochella peelii (Mitchell 1838), a freshwater species that can grow to ∼1.8 metres in length…”
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Whole Genome Assembly of the Snout Otter Clam, Lutraria rhynchaena , Using Nanopore and Illumina Data, Benchmarked Against Bivalve Genome Assemblies by Thai, Binh Thanh, Lee, Yin Peng, Gan, Han Ming, Austin, Christopher M, Croft, Laurence J, Trieu, Tuan Anh, Tan, Mun Hua

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Best Foot Forward: Nanopore Long Reads, Hybrid Meta-Assembly, and Haplotig Purging Optimizes the First Genome Assembly for the Southern Hemisphere Blacklip Abalone (Haliotis rubra) by Gan, Han Ming, Tan, Mun Hua, Austin, Christopher M., Sherman, Craig D. H., Wong, Yen Ting, Strugnell, Jan, Gervis, Mark, McPherson, Luke, Miller, Adam D.

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Digging deeper: new gene order rearrangements and distinct patterns of codons usage in mitochondrial genomes among shrimps from the Axiidea, Gebiidea and Caridea (Crustacea: Decapoda) by Tan, Mun Hua, Gan, Han Ming, Lee, Yin Peng, Poore, Gary C B, Austin, Christopher M

“…Whole mitochondrial DNA is being increasingly utilized for comparative genomic and phylogenetic studies at deep and shallow evolutionary levels for a range of…”
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Whole-genome sequencing and characterization of an antibiotic resistant Neisseria meningitidis B isolate from a military unit in Vietnam by Tran, Thach Xuan, Le, Trang Thu, Trieu, Long Phi, Austin, Christopher M, Van Quyen, Dong, Nguyen, Huong Minh

“…Invasive meningococcal disease (IMD) persists in military units in Vietnam despite the availability of antibiotics and vaccines. A hindrance to reducing the…”
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Dataset for genome sequencing and de novo assembly of the Vietnamese bighead catfish (Clarias macrocephalus Günther, 1864) by Duong, Thuy-Yen, Tan, Mun Hua, Lee, Yin Peng, Croft, Larry, Austin, Christopher M.

“…Freshwater catfish of the genus Clarias, known as the airbreathing catfish, are widespread and important for food security through small scale inland fisheries…”
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Genotypic characterization and genome comparison reveal insights into potential vaccine coverage and genealogy of Neisseria meningitidis in military camps in Vietnam by Le, Trang Thu, Tran, Thach Xuan, Trieu, Long Phi, Austin, Christopher M, Nguyen, Huong Minh, Quyen, Dong Van

“…remains the main cause of sporadic meningitis and sepsis in military camps in Vietnam. Yet, very limited molecular data of their genotypic and epidemiological…”
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Dataset for sequencing and de novo assembly of the European endangered white-clawed crayfish (Austropotamobius pallipes) abdominal muscle transcriptome by Grandjean, Frederic, Gan, Han Ming, Moumen, Bouziane, Giraud, Isabelle, Hatira, Skander, Cordaux, Richard, Austin, Christopher M.

“…The white-clawed crayfish (Austropotamobius pallipes) is an endangered species in Europe with limited genomic information. Despite its conservation status…”
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Social structure and landscape genetics of the endemic New Caledonian ant Leptomyrmex pallens Emery, 1883 (Hymenoptera: Formicidae: Dolichoderinae), in the context of fire-induced rainforest fragmentation by Berman, Maïa, Christopher M. Austin, Christopher P. Burridge, Adam D. Miller

“…Habitat fragmentation is a major threat to biodiversity, as it can alter ecological processes at various spatial and trophic scales. At the species level,…”
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First comprehensive multi-tissue transcriptome of Cherax quadricarinatus (Decapoda: Parastacidae) reveals unexpected diversity of endogenous cellulase by Tan, Mun Hua, Gan, Han Ming, Gan, Huan You, Lee, Yin Peng, Croft, Larry J, Schultz, Mark B, Miller, Adam D, Austin, Christopher M

“…The Australian freshwater crayfish species, Cherax quadricarinatus Von Martens, 1868, is an important commercial and invasive species that is also being…”
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Phylogenetic relationships of the globally distributed freshwater prawn genus Macrobrachium (Crustacea: Decapoda: Palaemonidae): biogeography, taxonomy and the convergent evolution of abbreviated larval development by Murphy, Nicholas P., Austin, Christopher M.

“…There has hitherto been little research into evolutionary and taxonomic relationships amongst species of the freshwater prawn genus Macrobrachium Bate across…”
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iDNA at Sea: Recovery of Whale Shark (Rhincodon typus) Mitochondrial DNA Sequences from the Whale Shark Copepod (Pandarus rhincodonicus) Confirms Global Population Structure by Meekan, Mark, Austin, Christopher M., Tan, Mun H., Wei, Nu-Wei V., Miller, Adam, Pierce, Simon J., Rowat, David, Stevens, Guy, Davies, Tim K., Ponzo, Alessandro, Gan, Han Ming

“…The whale shark (Rhincodon typus) is an iconic and endangered species with a broad distribution spanning warm-temperate and tropical oceans. Effective…”
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ORDER within the chaos: Insights into phylogenetic relationships within the Anomura (Crustacea: Decapoda) from mitochondrial sequences and gene order rearrangements by Tan, Mun Hua, Gan, Han Ming, Lee, Yin Peng, Linton, Stuart, Grandjean, Frederic, Bartholomei-Santos, Marlise Ladvocat, Miller, Adam D., Austin, Christopher M.

“…[Display omitted] •This study more than doubles complete mitogenome resources for the decapod infraorder Anomura.•New feature in MitoPhAST version 2.0 extracts…”
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MitoPhAST, a new automated mitogenomic phylogeny tool in the post-genomic era with a case study of 89 decapod mitogenomes including eight new freshwater crayfish mitogenomes by Tan, Mun Hua, Gan, Han Ming, Schultz, Mark B., Austin, Christopher M.

“…[Display omitted] •MitoPhAST is an automated tool for phylogenetic analysis of mitochondrial proteins.•We report eight new mitogenome sequences for parastacid…”
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