Search Results - "Chowdhary, Rajesh"

Bayesian inference of protein–protein interactions from biological literature by Chowdhary, Rajesh, Zhang, Jinfeng, Liu, Jun S.

“…Motivation: Protein–protein interaction (PPI) extraction from published biological articles has attracted much attention because of the importance of protein…”
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Modeling of local ionospheric time varying characteristics based on singular value decomposition over low-latitude GPS stations by Neeli, Raghavendra, Dabbakuti, J R K Kumar, Rajesh Chowdhary, V., Tripathi, Nitin K., Devanaboyina, Venkata Ratnam

“…Singular Value Decomposition (SVD) model is implemented to recognize the Total Electron Content (TEC) time series of daily, temporal as well as seasonal…”
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Integrated bio-entity network: a system for biological knowledge discovery by Bell, Lindsey, Chowdhary, Rajesh, Liu, Jun S, Niu, Xufeng, Zhang, Jinfeng

“…A significant part of our biological knowledge is centered on relationships between biological entities (bio-entities) such as proteins, genes, small…”
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Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences by Kalkatawi, Manal, Rangkuti, Farania, Schramm, Michael, Jankovic, Boris R., Kamau, Allan, Chowdhary, Rajesh, Archer, John A. C., Bajic, Vladimir B.

“…Motivation: Recognition of poly(A) signals in mRNA is relatively straightforward due to the presence of easily recognizable polyadenylic acid tail. However,…”
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Context-specific protein network miner--an online system for exploring context-specific protein interaction networks from the literature by Chowdhary, Rajesh, Tan, Sin Lam, Zhang, Jinfeng, Karnik, Shreyas, Bajic, Vladimir B, Liu, Jun S

“…Protein interaction networks (PINs) specific within a particular context contain crucial information regarding many cellular biological processes. For example,…”
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Comparison of GPS-TEC measurements with IRI-2007 and IRI-2012 modeled TEC at an equatorial latitude station, Bangkok, Thailand by Arunpold, Sanit, Tripathi, Nitin K., Rajesh Chowdhary, V., Raju, Durairaju Kumaran

“…This paper presents the first vertical total electron content (VTEC) data derived from a dual-frequency GPS receiver installed at the Asian Institute of…”
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Linear time series modeling of GPS-derived TEC observations over the Indo-Thailand region by Suraj, Puram Sai, Kumar Dabbakuti, J. R. K., Chowdhary, V. Rajesh, Tripathi, Nitin K., Ratnam, D. Venkata

“…This paper proposes a linear time series model to represent the climatology of the ionosphere and to investigate the characteristics of hourly averaged total…”
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Simplified method for predicting a functional class of proteins in transcription factor complexes by Piatek, Marek J, Schramm, Michael C, Burra, Dharani D, Binshbreen, Abdulaziz, Jankovic, Boris R, Chowdhary, Rajesh, Archer, John A C, Bajic, Vladimir B

“…Initiation of transcription is essential for most of the cellular responses to environmental conditions and for cell and tissue specificity. This process is…”
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Time Series Analysis of Urban Expansion Using Land-Use and Land-Cover Change Detection of LANDSAT Imagery for Pune District of Maharashtra by Jagtap, Anjali A, Shedge, D. K., Degaonkar, Varsha, Chowdhary, V Rajesh

“…The study of changes in Land-Use and Land-Cover (LULC) helps in planning and management of urban expansion for an area. The attempt made to study the changes…”
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Flood Risk Area Identification of Pune District using GIS Techniques by Jagtap, Anjali A, Shedge, D. K., Degaonkar, Varsha, Chowdhary, V Rajesh

“…Flood disaster has shown adverse effects on society, the environment and the economy. Recently, the Pune district of Maharashtra state in India observed its…”
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Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes by Brahmachary, Manisha, Schönbach, Christian, Yang, Liang, Huang, Enli, Tan, Sin Lam, Chowdhary, Rajesh, Krishnan, S P T, Lin, Chin-Yo, Hume, David A, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Bajic, Vladimir B

“…Mammalian antimicrobial peptides (AMPs) are effectors of the innate immune response. A multitude of signals coming from pathways of mammalian pathogen/pattern…”
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Characterization of GPS-TEC in a low-latitude region over Thailand during 2010-2012 by V. Rajesh Chowdhary, Nitin K. Tripathi, Sanit Arunpold, Durairaju Kumaran Raju

“…This paper presents the first results of vertical total electron content (VTEC) data from (1) a dual-frequency GPS receiver installed at the Chiang Mai…”
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IMID: integrated molecular interaction database by BALAJI, Sentil, MCCLENDON, Charles, CHOWDHARY, Rajesh, LIU, Jun S, JINFENG ZHANG

“…Molecular interaction information, such as protein-protein interactions and protein-small molecule interactions, is indispensable for understanding the…”
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Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences by Kalkatawi, Manal, Rangkuti, Farania, Schramm, Michael, Jankovic, Boris R, Kamau, Allan, Chowdhary, Rajesh, Archer, John A C, Bajic, Vladimir B

“…Abstract Contact:  vladimir.bajic@kaust.edu.sa Supplementary information:  Supplementary data are available at Bioinformatics online…”
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Dragon TIS Spotter: an Arabidopsis-derived predictor of translation initiation sites in plants by Magana-Mora, Arturo, Ashoor, Haitham, Jankovic, Boris R, Kamau, Allan, Awara, Karim, Chowdhary, Rajesh, Archer, John A C, Bajic, Vladimir B

“…In higher eukaryotes, the identification of translation initiation sites (TISs) has been focused on finding these signals in cDNA or mRNA sequences. Using…”
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A database of annotated promoters of genes associated with common respiratory and related diseases by Chowdhary, Rajesh, Tan, Sin Lam, Pavesi, Giulio, Jin, Jingjing, Dong, Difeng, Mathur, Sameer K, Burkart, Arthur, Narang, Vipin, Glurich, Ingrid, Raby, Benjamin A, Weiss, Scott T, Wong, Limsoon, Liu, Jun S, Bajic, Vladimir B

“…Many genes have been implicated in the pathogenesis of common respiratory and related diseases (RRDs), yet the underlying mechanisms are largely unknown…”
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Association of breast cancer in men with exposure to 5-α reductase inhibitors: A RADAR report by Belknap, Steven M, Godinez-Puig, Victoria, Brannigan, Robert E, Lin, Simon M, Cashy, John, Chowdhary, Rajesh, Postelnick, Michael J, Fotis, Michael A, Irwig, Michael, Khan, Seema Ahsan, Gradishar, William John, Garg, Vishvas, Shen, Xian, Raisch, Dennis W, Nardone, Beatrice, Rosen, Steven T., Edwards, Beatrice J., McKoy, June M, Yarnold, Paul R, West, Dennis P.

“…Abstract only 2532 Background: Breast cancers in men (BCM) account for <1% of all breast cancers. Dihydrotestosterone (DHT) inhibits proliferation of normal…”
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PIMiner: a web tool for extraction of protein interactions from biomedical literature by Chowdhary, Rajesh, Zhang, Jinfeng, Tan, Sin Lam, Osborne, Daniel E, Bajic, Vladimir B, Liu, Jun S

“…Information on Protein Interactions (Pls) is valuable for biomedical research, but often lies buried in the scientific literature and cannot be readily…”
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Genome-wide analysis of regions similar to promoters of histone genes by Chowdhary, Rajesh, Bajic, Vladimir B, Dong, Difeng, Wong, Limsoon, Liu, Jun S

“…The purpose of this study is to: i) develop a computational model of promoters of human histone-encoding genes (shortly histone genes), an important class of…”
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Spatial and temporal characteristics of ionospheric total electron content over Indian equatorial and low-latitude GNSS stations by Sivavaraprasad, G, Otsuka, Yuichi, Tripathi, Nitin Kumar, Chowdhary, V Rajesh, Ratnam, D Venkata, Khan, Mohammed Afzal

“…The study and understanding of the intermittent characteristics of equatorial and low latitude ionosphere is crucial for modelling and forecasting the…”
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