Search Results - "Choisne, Nathalie"

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development by Daccord, Nicolas, Celton, Jean-Marc, Linsmith, Gareth, Becker, Claude, Choisne, Nathalie, Schijlen, Elio, van de Geest, Henri, Bianco, Luca, Micheletti, Diego, Velasco, Riccardo, Di Pierro, Erica Adele, Gouzy, Jérôme, Rees, D Jasper G, Guérif, Philippe, Muranty, Hélène, Durel, Charles-Eric, Laurens, François, Lespinasse, Yves, Gaillard, Sylvain, Aubourg, Sébastien, Quesneville, Hadi, Weigel, Detlef, van de Weg, Eric, Troggio, Michela, Bucher, Etienne

“…Etienne Bucher and colleagues use a combination of short- and long-read sequencing, along with optical mapping technologies, to produce the high-quality de…”
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Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution by Geering, Andrew D. W., Maumus, Florian, Copetti, Dario, Choisne, Nathalie, Zwickl, Derrick J., Zytnicki, Matthias, McTaggart, Alistair R., Scalabrin, Simone, Vezzulli, Silvia, Wing, Rod A., Quesneville, Hadi, Teycheney, Pierre-Yves

“…The extent and importance of endogenous viral elements have been extensively described in animals but are much less well understood in plants. Here we describe…”
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Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography by Normand, Philippe, Lapierre, Pascal, Tisa, Louis S, Gogarten, Johann Peter, Alloisio, Nicole, Bagnarol, Emilie, Bassi, Carla A, Berry, Alison M, Bickhart, Derek M, Choisne, Nathalie, Couloux, Arnaud, Cournoyer, Benoit, Cruveiller, Stephane, Daubin, Vincent, Demange, Nadia, Francino, Maria Pilar, Goltsman, Eugene, Huang, Ying, Kopp, Olga R, Labarre, Laurent, Lapidus, Alla, Lavire, Celine, Marechal, Joelle, Martinez, Michele, Mastronunzio, Juliana E, Mullin, Beth C, Niemann, James, Pujic, Pierre, Rawnsley, Tania, Rouy, Zoe, Schenowitz, Chantal, Sellstedt, Anita, Tavares, Fernando, Tomkins, Jeffrey P, Vallenet, David, Valverde, Claudio, Wall, Luis G, Wang, Ying, Medigue, Claudine, Benson, David R

“…Soil bacteria that also form mutualistic symbioses in plants encounter two major levels of selection. One occurs during adaptation to and survival in soil, and…”
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Endogenous Caulimovirids: Fossils, Zombies, and Living in Plant Genomes by Vassilieff, Héléna, Geering, Andrew D W, Choisne, Nathalie, Teycheney, Pierre-Yves, Maumus, Florian

“…The is a family of double-stranded DNA viruses that infect plants. The genomes of most vascular plants contain endogenous caulimovirids (ECVs), a class of…”
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RepetDB: a unified resource for transposable element references by Amselem, Joëlle, Cornut, Guillaume, Choisne, Nathalie, Alaux, Michael, Alfama-Depauw, Françoise, Jamilloux, Véronique, Maumus, Florian, Letellier, Thomas, Luyten, Isabelle, Pommier, Cyril, Adam-Blondon, Anne-Françoise, Quesneville, Hadi

“…Thanks to their ability to move around and replicate within genomes, transposable elements (TEs) are perhaps the most important contributors to genome…”
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CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes by Vassilieff, Héléna, Haddad, Sana, Jamilloux, Véronique, Choisne, Nathalie, Sharma, Vikas, Giraud, Delphine, Wan, Mariène, Serfraz, Saad, Geering, Andrew D W, Teycheney, Pierre-Yves, Maumus, Florian

“…Plant, animal and protist genomes often contain endogenous viral elements (EVEs), which correspond to partial and sometimes entire viral genomes that have been…”
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Transposable Elements in the Genome of the Lichen-Forming Fungus Umbilicaria pustulata and Their Distribution in Different Climate Zones along Elevation by Dal Grande, Francesco, Jamilloux, Véronique, Choisne, Nathalie, Calchera, Anjuli, Rolshausen, Gregor, Petersen, Malte, Schulz, Meike, Nilsson, Maria A, Schmitt, Imke

“…Transposable elements (TEs) are an important source of genome plasticity across the tree of life. Drift and natural selection are important forces shaping TE…”
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GnpIS: an information system to integrate genetic and genomic data from plants and fungi by Steinbach, Delphine, Alaux, Michael, Amselem, Joelle, Choisne, Nathalie, Durand, Sophie, Flores, Raphaël, Keliet, Aminah-Olivia, Kimmel, Erik, Lapalu, Nicolas, Luyten, Isabelle, Michotey, Célia, Mohellibi, Nacer, Pommier, Cyril, Reboux, Sébastien, Valdenaire, Dorothée, Verdelet, Daphné, Quesneville, Hadi

“…Data integration is a key challenge for modern bioinformatics. It aims to provide biologists with tools to explore relevant data produced by different studies…”
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The TATA motif, the CAA motif and the poly(T) transcription termination motif are all important for transcription re‐initiation on plant tRNA genes by Yukawa, Yasushi, Sugita, Mamoru, Choisne, Nathalie, Small, Ian, Sugiura, Masahiro

“…Summary The effect of alteration of 5′ and 3′ flanking sequences on the transcription of plant tRNA genes was analysed using an RNA polymerase III‐dependent in…”
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The Rosa genome provides new insights into the domestication of modern roses by Raymond, Olivier, Gouzy, Jérôme, Just, Jérémy, Badouin, Hélène, Verdenaud, Marion, Lemainque, Arnaud, Vergne, Philippe, Moja, Sandrine, Choisne, Nathalie, Pont, Caroline, Carrère, Sébastien, Caissard, Jean-Claude, Couloux, Arnaud, Cottret, Ludovic, Aury, Jean-Marc, Szécsi, Judit, Latrasse, David, Madoui, Mohammed-Amin, François, Léa, Fu, Xiaopeng, Yang, Shu-Hua, Dubois, Annick, Piola, Florence, Larrieu, Antoine, Perez, Magali, Labadie, Karine, Perrier, Lauriane, Govetto, Benjamin, Labrousse, Yoan, Villand, Priscilla, Bardoux, Claudia, Boltz, Véronique, Lopez-Roques, Céline, Heitzler, Pascal, Vernoux, Teva, Vandenbussche, Michiel, Quesneville, Hadi, Boualem, Adnane, Bendahmane, Abdelhafid, Liu, Chang, Le Bris, Manuel, Salse, Jérôme, Baudino, Sylvie, Benhamed, Moussa, Wincker, Patrick, Bendahmane, Mohammed

“…Roses have high cultural and economic importance as ornamental plants and in the perfume industry. We report the rose whole-genome sequencing and assembly and…”
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The Medicago genome provides insight into the evolution of rhizobial symbioses by Debellé, Frédéric, Geurts, Rene, Cannon, Steven B., Udvardi, Michael K., Mayer, Klaus F. X., Gouzy, Jérôme, Van de Peer, Yves, Proost, Sebastian, Cook, Douglas R., Meyers, Blake C., Spannagl, Manuel, De Mita, Stéphane, Krishnakumar, Vivek, Gundlach, Heidrun, Zhou, Shiguo, Mudge, Joann, Bharti, Arvind K., Murray, Jeremy D., Naoumkina, Marina A., Rosen, Benjamin, Silverstein, Kevin A. T., Tang, Haibao, Rombauts, Stephane, Zhao, Patrick X., Zhou, Peng, Barbe, Valérie, Bardou, Philippe, Bechner, Michael, Bellec, Arnaud, Berger, Anne, Bidwell, Shelby, Bisseling, Ton, Choisne, Nathalie, Denny, Roxanne, Dai, Xinbin, Dudez, Anne-Marie, Farmer, Andrew D., Fouteau, Stéphanie, Franken, Carolien, Gibelin, Chrystel, Gish, John, Goldstein, Steven, González, Alvaro J., Green, Pamela J., Hua, Axin, Humphray, Sean J., Jing, Yi, Jöcker, Anika, Kenton, Steve M., Kim, Dong-Jin, Klee, Kathrin, Lai, Hongshing, Lang, Chunting, Lin, Shaoping, Macmil, Simone L., Magdelenat, Ghislaine, McCorrison, Jamison, Monaghan, Erin L., Mun, Jeong-Hwan, Najar, Fares Z., Nicholson, Christine, Noirot, Céline, Poulain, Julie, Prion, Florent, Qu, Chunmei, Retzel, Ernest F., Riddle, Claire, Sallet, Erika, Samain, Sylvie, Samson, Nicolas, Sanders, Iryna, Saurat, Olivier, Schiex, Thomas, Segurens, Béatrice, Severin, Andrew J., Sherrier, D. Janine, Shi, Ruihua, Sims, Sarah, Singer, Susan R., Sinharoy, Senjuti, Sterck, Lieven, Wang, Bing-Bing, Wang, Keqin, Wang, Mingyi, Wang, Xiaohong, Warfsmann, Jens, White, Doug D., Wiley, Graham B., Wincker, Patrick, Xing, Yanbo, Yang, Limei, Yao, Ziyun, Ying, Fu, Zuber, Antoine, Dénarié, Jean, Dixon, Richard A., Schwartz, David C., Rogers, Jane, Quétier, Francis, Roe, Bruce A.

“…Sequencing of Medicago truncatula , a model organism of legume biology, shows that genome duplications had a role in the evolution of endosymbiotic nitrogen…”
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grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla by Jaillon, O, Aury, J.M, Noel, B, Policriti, A, Clepet, C, Casagrande, A, Choisne, N, Aubourg, S, Vitulo, N, Jubin, C

“…The analysis of the first plant genomes provided unexpected evidence for genome duplication events in species that had previously been considered as true…”
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A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits by Hibrand Saint-Oyant, L., Ruttink, T., Hamama, L., Kirov, I., Lakhwani, D., Zhou, N. N., Bourke, P. M., Daccord, N., Leus, L., Schulz, D., Van de Geest, H., Hesselink, T., Van Laere, K., Debray, K., Balzergue, S., Thouroude, T., Chastellier, A., Jeauffre, J., Voisine, L., Gaillard, S., Borm, T. J. A., Arens, P., Voorrips, R. E., Maliepaard, C., Neu, E., Linde, M., Le Paslier, M. C., Bérard, A., Bounon, R., Clotault, J., Choisne, N., Quesneville, H., Kawamura, K., Aubourg, S., Sakr, S., Smulders, M. J. M., Schijlen, E., Bucher, E., Debener, T., De Riek, J., Foucher, F.

“…Rose is the world’s most important ornamental plant, with economic, cultural and symbolic value. Roses are cultivated worldwide and sold as garden roses, cut…”
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A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3) by Canaguier, A., Grimplet, J., Di Gaspero, G., Scalabrin, S., Duchêne, E., Choisne, N., Mohellibi, N., Guichard, C., Rombauts, S., Le Clainche, I., Bérard, A., Chauveau, A., Bounon, R., Rustenholz, C., Morgante, M., Le Paslier, M.-C., Brunel, D., Adam-Blondon, A.-F.

“…A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)…”
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Transactivation of a target gene using a suppressor tRNA in transgenic tobacco plants by Choisne, Nathalie, Martin‐Canadell, Alfred, Small, Ian

“…Summary The abundance of tRNAs, together with their central role in translation, has generated considerable interest in the use of tRNA genes for…”
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The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications by Choisne, Nathalie, Demange, Nadia, Orjeda, Gisela, Samain, Sylvie, D'Hont, Angelique, Cattolico, Laurence, Pelletier, Eric, Couloux, Arnaud, Segurens, Beatrice, Wincker, Patrick, Scarpelli, Claude, Weissenbach, Jean, Salanobat, Marcel, Quetier, Francis, Singh, Nagendra K., Mohapatra, Trilochan, Sharma, Tilak R., Gaikwad, Kishor, Singh, Archana, Dalal, Vivek, Srivastava, Subodh K., Dixit, Anupam, Pal, Ajit K., Ghaz, Irfan A., Yadav, Mahavir, Pandit, Awadhesh, Bhargava, Ashutosh, Sureshbabu, K., Dixit, Rekha, Singh, Harvinder, Swain, Suresh C., Pal, Sumita, Ragiba, M., Singh, Pradeep K., Singha, Vibha, Mendiratta, Sangeeta D., Batra, Kamlesh, Raghuvanshi, Saurabh, Mohanty, Amitabh, Bhart, Arvind K., Gaur, Anupama, Gupta, Vikrant, Kumar, Dibyendu, Vydianathan, Ravi, Vij, Shubha

“…Rice is an important staple food and, with the smallest cereal genome, serves as a reference species for studies on the evolution of cereals and other grasses…”
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A high-quality sequence of Rosa chinensis to elucidate genome structure and ornamental traits by Hibrand-Saint Oyant, Laurence, Ruttink, Tom, Hamama, Latifa, Kirov, Ilya, Lakhwani, Deepika, Zhou, Ning-Ning, Bourke, Peter, Daccord, Nicolas, Leus, Leen, Schulz, Dietmar, van de Geest, Henri, Hesselink, Thamara, van Laere, Katrijn, Balzergue, Sandrine, Thouroude, Tatiana, Chastellier, Annie, Jeauffre, Julien, Voisine, Linda, Gaillard, Sylvain, Borm, Theo, Arens, Paul, Voorrips, Roeland, Maliepaard, Chris, Neu, Enzo, Linde, Marcus, Le Paslier, Marie-Christine, Berard, Aurelie, Bounon, Remi, Clotault, Jeremy, Choisne, Nathalie, Quesneville, Hadi, Kawamura, Koji, Aubourg, Sébastien, Sakr, Soulaiman, Smulder, Rene, Schijlen, Elio, Bucher, Etienne, Debener, Thomas, de Riek, Jan, Foucher, Fabrice

“…Rose is the worlds most important ornamental plant with economic, cultural and symbolic value. Roses are cultivated worldwide and sold as garden roses, cut…”
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Mining Plant Genomic and Genetic Data Using the GnpIS Information System by Adam-Blondon, A-F, Alaux, M, Durand, S, Letellier, T, Merceron, G, Mohellibi, N, Pommier, C, Steinbach, D, Alfama, F, Amselem, J, Charruaud, D, Choisne, N, Flores, R, Guerche, C, Jamilloux, V, Kimmel, E, Lapalu, N, Loaec, M, Michotey, C, Quesneville, H

“…GnpIS is an information system designed to help scientists working on plants and fungi to decipher the molecular and genetic architecture of trait variations…”
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The Medicago genome provides insight into the evolution of rhizobial symbioses by Young, Nevin, Debellé, Frédéric, Oldroyd, Giles, Geurts, Rene, Cannon, Steven, Udvardi, Michael, Benedito, Vagner, Mayer, Klaus, Gouzy, Jérôme, Schoof, Heiko, van de Peer, Yves, Proost, Sebastian, Cook, Douglas, Meyers, Blake, Spannagl, Manuel, Cheung, Foo, de Mita, Stéphane, Krishnakumar, Vivek, Gundlach, Heidrun, Zhou, Shiguo, Mudge, Joann, Bharti, Arvind, Murray, Jeremy, Naoumkina, Marina, Rosen, Benjamin, Silverstein, Kevin, Tang, Haibao, Rombauts, Stephane, Zhao, Patrick, Zhou, Peng, Barbe, Valérie, Bardou, Philippe, Bechner, Michael, Bellec, Arnaud, Berger, Anne, Bergès, Hélène, Bidwell, Shelby, Bisseling, Ton, Choisne, Nathalie, Couloux, Arnaud, Denny, Roxanne, Deshpande, Shweta, Dai, Xinbin, Doyle, Jeff, Dudez, Anne-Marie, Farmer, Andrew, Fouteau, Stéphanie, Franken, Carolien, Gibelin, Chrystel, Gish, John, Goldstein, Steven, González, Alvaro, Green, Pamela, Hallab, Asis, Hartog, Marijke, Hua, Axin, Humphray, Sean, Jeong, Dong-Hoon, Jing, Yi, Jöcker, Anika, Kenton, Steve, Kim, Dong-Jin, Klee, Kathrin, Lai, Hongshing, Lang, Chunting, Lin, Shaoping, Macmil, Simone, Magdelenat, Ghislaine, Matthews, Lucy, Mccorrison, Jamison, Monaghan, Erin, Mun, Jeong-Hwan, Najar, Fares, Nicholson, Christine, Noirot, Céline, O’bleness, Majesta, Paule, Charles, Poulain, Julie, Prion, Florent, Qin, Baifang, Qu, Chunmei, Retzel, Ernest, Riddle, Claire, Sallet, Erika, Samain, Sylvie, Samson, Nicolas, Sanders, Iryna, Saurat, Olivier, Scarpelli, Claude, Schiex, Thomas, Segurens, Béatrice, Severin, Andrew, Sherrier, D. Janine, Shi, Ruihua, Sims, Sarah, Singer, Susan, Sinharoy, Senjuti, Sterck, Lieven, Viollet, Agnès, Wang, Bing-Bing

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ATM homologue from Arabidopsis thaliana: complete genomic organisation and expression analysis by Garcia, V, Salanoubat, M, Choisne, N, Tissier, A

“…ATM is a gene mutated in the human disease ataxia telangiectasia with reported homologues in yeast, Drosophila, Xenopus and mouse. Whenever mutants are…”
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