Search Results - "Choi, Hoseong"
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Unveiling Mycoviromes Using Fungal Transcriptomes
Published in International journal of molecular sciences (18-09-2022)“…Viruses infecting fungi are referred to as mycoviruses. Here, we carried out in silico mycovirome studies using public fungal transcriptomes mostly derived…”
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Viromes of 15 Pepper (Capsicum annuum L.) Cultivars
Published in International journal of molecular sciences (10-09-2022)“…Pepper (Capsicum annuum L.) plants produce berry fruits that are used as spices. Here, we examined the viromes of 15 pepper cultivars through RNA sequencing…”
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In Silico Virome Analysis of Chinese Narcissus Transcriptomes Reveals Diverse Virus Species and Genetic Diversity at Different Flower Development Stages
Published in Biology (Basel, Switzerland) (05-08-2023)“…Viromes of Chinese narcissus flowers were explored using transcriptome data from 20 samples collected at different flower development stages. Quality…”
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Sweet potato viromes in eight different geographical regions in Korea and two different cultivars
Published in Scientific reports (13-02-2020)“…The sweet potato in the family Convolvulaceae is a dicotyledonous perennial plant. Here, we conducted a comprehensive sweet potato virome study using 10…”
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5
The pepper virome: natural co-infection of diverse viruses and their quasispecies
Published in BMC genomics (08-06-2017)“…The co-infection of diverse viruses in a host plant is common; however, little is known about viral populations and their quasispecies in the host. Here, we…”
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Identification of Viruses and Viroids Infecting Tomato and Pepper Plants in Vietnam by Metatranscriptomics
Published in International journal of molecular sciences (13-10-2020)“…Tomato ( L.) and pepper ( L.) plants belonging to the family are cultivated worldwide. The rapid development of next-generation sequencing (NGS) technology…”
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In silico approach to reveal viral populations in grapevine cultivar Tannat using transcriptome data
Published in Scientific reports (28-10-2015)“…Viruses are ubiquitous and present in a wide range of settings, from living organisms to various environments. Although viruses are regarded as important…”
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A comparison of transcriptional patterns and mycological phenotypes following infection of Fusarium graminearum by four mycoviruses
Published in PloS one (25-06-2014)“…Many fungi-infecting viruses, which are termed mycoviruses, have been identified, and most do not cause any visible symptoms. Some mycoviruses, however, can…”
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Time-Course Small RNA Profiling Reveals Rice miRNAs and Their Target Genes in Response to Rice Stripe Virus Infection
Published in PloS one (14-09-2016)“…It has been known that many microRNAs (miRNAs) are involved in the regulation for the plant development and defense mechanism by regulating the expression of…”
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Evolution and Phylogeny of Soybean Mosaic Virus Based on 143 Complete Genomes
Published in International journal of molecular sciences (20-12-2022)“…(SMV) of the genus is an important virus in cultivated soybeans. Here, we obtained 7 SMV genomes from soybean germplasms using RNA sequencing and conducted a…”
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De Novo Transcriptome Assembly of Two Microsorum Fern Species Identifies Enzymes Required for Two Upstream Pathways of Phytoecdysteroids
Published in International journal of molecular sciences (19-02-2021)“…species produce a high amount of phytoecdysteroids (PEs), which are widely used in traditional medicine in the Pacific islands. The PEs in two different…”
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The Signatures of Natural Selection and Molecular Evolution in Fusarium graminearum Virus 1
Published in Frontiers in microbiology (12-11-2020)“…Fusarium graminearum virus 1 (FgV1) is a positive-sense ssRNA virus that confers hypovirulence in its fungal host, Fusarium graminearum . Like most…”
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13
Barley RNA viromes in six different geographical regions in Korea
Published in Scientific reports (05-09-2018)“…Barley is a kind of cereal grass belonging to the family Poaceae . To examine viruses infecting winter barley in Korea, we carried out a comprehensive study of…”
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Exploring Tomato Fruit Viromes through Transcriptome Data Analysis
Published in Viruses (24-10-2023)“…This study delves into the complex landscape of viral infections in tomatoes ( ) using available transcriptome data. We conducted a virome analysis, revealing…”
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Comparative Microbiome Study of Mummified Peach Fruits by Metagenomics and Metatranscriptomics
Published in Plants (Basel) (18-08-2020)“…The dried peach fruits clinging to peach trees or lying on the ground nearby are known as mummified peach fruits. Here, we examined the microbiome communities…”
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Identification of viruses infecting six plum cultivars in Korea by RNA-sequencing
Published in PeerJ (San Francisco, CA) (29-07-2020)“…Plums are a kind of stone fruit, a category that includes peaches, cherries, apricots, and almonds. In Korea, Japanese plum trees are usually cultivated as…”
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Transcriptional Changes in Damask Rose Suspension Cell Culture Revealed by RNA Sequencing
Published in Plants (Basel) (22-02-2024)“…Damask roses ( ) are widely used in cosmetics and pharmaceutics. Here, we established an in vitro suspension cell culture for calli derived from damask rose…”
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Comparative Transcriptome Profiles of Human HaCaT Cells in Response to Gynostemma pentaphyllum Extracts Obtained Using Three Independent Methods by RNA Sequencing
Published in Life (Basel, Switzerland) (02-02-2023)“…(GP) is widely used in herbal medicine. In this study, we developed a method for the large-scale production of GP cells using plant tissue culture techniques…”
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Investigating antiviral activities of iodine-conjugated organic agents against major viruses infecting pepper in Korea
Published in Chemical and biological technologies in agriculture (04-03-2024)“…Background Plant viruses cause economic losses by reducing the quantity and quality of major crops. This issue is a growing concern due to the expansion of…”
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Investigating Variability in Viral Presence and Abundance across Soybean Seed Development Stages Using Transcriptome Analysis
Published in Plants (Basel) (01-09-2023)“…Plant transcriptomes offer a valuable resource for studying viral communities (viromes). In this study, we explore how plant transcriptome data can be applied…”
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