Search Results - "Cheung, Ngaam J."

De novo protein structure prediction using ultra-fast molecular dynamics simulation by Cheung, Ngaam J, Yu, Wookyung

“…Modern genomics sequencing techniques have provided a massive amount of protein sequences, but experimental endeavor in determining protein structures is…”
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Sibe: a computation tool to apply protein sequence statistics to predict folding and design in silico by Cheung, Ngaam J, Yu, Wookyung

“…Evolutionary information contained in the amino acid sequences of proteins specifies the biological function and fold, but exactly what information contained…”
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Adaptive firefly algorithm: parameter analysis and its application by Cheung, Ngaam J, Ding, Xue-Ming, Shen, Hong-Bin

“…As a nature-inspired search algorithm, firefly algorithm (FA) has several control parameters, which may have great effects on its performance. In this study,…”
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Accurate prediction of protein torsion angles using evolutionary signatures and recurrent neural network by Xu, Yong-Chang, ShangGuan, Tian-Jun, Ding, Xue-Ming, Cheung, Ngaam J.

“…The amino acid sequence of a protein contains all the necessary information to specify its shape, which dictates its biological activities. However, it is…”
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Leri: A web-server for identifying protein functional networks from evolutionary couplings by Cheung, Ngaam J., John Peter, Arun T., Kornmann, Benoit

“…[Display omitted] •Identify the evolutionary signatures (termed “residue communities”) from protein sequences.•The identified residue communities specify the…”
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Csf1: A Putative Lipid Transport Protein Required for Homeoviscous Adaptation of the Lipidome by John Peter, Arun T., Cheung, Ngaam J., Kornmann, Benoît

“…The non-vesicular transport of lipids between organelles mediated by lipid transport proteins (LTPs) is a key determinant of organelle biogenesis and function…”
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OptiFel: A Convergent Heterogeneous Particle Swarm Optimization Algorithm for Takagi-Sugeno Fuzzy Modeling by Cheung, Ngaam J., Ding, Xue-Ming, Shen, Hong-Bin

“…Data-driven design of accurate and reliable Takagi-Sugeno (T-S) fuzzy systems has attracted a lot of attention, where the model structures and parameters are…”
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Parameter estimation of Takagi–Sugeno fuzzy system using heterogeneous cuckoo search algorithm by Ding, Xueming, Xu, Zhenkai, Cheung, Ngaam J., Liu, Xiaohui

“…In this paper, a novel method, called intelligent Takagi–Sugeno Modeling (iTaSuM), for identifying the structure and parameters of T–S fuzzy system is…”
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Rewiring phospholipid biosynthesis reveals resilience to membrane perturbations and uncovers regulators of lipid homeostasis by John Peter, Arun T, van Schie, Sabine N S, Cheung, Ngaam J, Michel, Agnès H, Peter, Matthias, Kornmann, Benoît

“…The organelles of eukaryotic cells differ in their membrane lipid composition. This heterogeneity is achieved by the localization of lipid synthesizing and…”
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A Nonhomogeneous Cuckoo Search Algorithm Based on Quantum Mechanism for Real Parameter Optimization by Cheung, Ngaam J., Xue-Ming Ding, Hong-Bin Shen

“…Cuckoo search (CS) algorithm is a nature-inspired search algorithm, in which all the individuals have identical search behaviors. However, this simple…”
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Shared structural features of Miro binding control mitochondrial homeostasis by Covill-Cooke, Christian, Kwizera, Brian, López-Doménech, Guillermo, Thompson, Caleb OD, Cheung, Ngaam J, Cerezo, Ema, Peterka, Martin, Kittler, Josef T, Kornmann, Benoît

“…Miro proteins are universally conserved mitochondrial calcium-binding GTPases that regulate a multitude of mitochondrial processes, including transport,…”
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Protein folds recognized by an intelligent predictor based-on evolutionary and structural information by Cheung, Ngaam J., Ding, Xue-Ming, Shen, Hong-Bin

“…Protein fold recognition is an important and essential step in determining tertiary structure of a protein in biological science. In this study, a model termed…”
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A Non-homogeneous Firefly Algorithm and Its Convergence Analysis by Cheung, Ngaam J., Ding, Xue-Ming, Shen, Hong-Bin

“…The firefly algorithm is a swarm-based search algorithm, in which fireflies cooperate with each other to look for the optimal solution to a given optimization…”
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Modeling nonlinear dynamic biological systems with human-readable fuzzy rules optimized by convergent heterogeneous particle swarm by Cheung, Ngaam J., Xu, Zhen-Kai, Ding, Xue-Ming, Shen, Hong-Bin

“…•Human-readable rules based modeling is proposed for biological systems.•The fuzzy model (MoPath) is embedded in optimization framework.•Particle swarm…”
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Hierarchical particle swarm optimizer for minimizing the non-convex potential energy of molecular structure by Cheung, Ngaam J., Shen, Hong-Bin

“…•Hierarchical heterogeneous PSO is to find the minimal energy of the 3D structure.•Hierarchical groups are to accomplish different tasks using heterogeneous…”
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A supervised particle swarm algorithm for real-parameter optimization by Cheung, Ngaam J., Ding, Xue-Ming, Shen, Hong-Bin

“…Particle swarm optimization (PSO) is a heuristics method based on a homogeneous population with identical search behavior. The simple homogeneous search is not…”
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