Search Results - "Cherny, D I"

DNA Deformations near Charged Surfaces: Electron and Atomic Force Microscopy Views by Faas, F.G.A., Rieger, B., van Vliet, L.J., Cherny, D.I.

“…DNA is a very important cell structural element, which determines the level of expression of genes by virtue of its interaction with regulatory proteins. We…”
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High resolution mapping DNAs by R-loop atomic force microscopy by Klinov, Dmitry V., Lagutina, Irina V., Prokhorov, Valery V., Neretina, Tatyana, Khil, Pavel P., Lebedev, Yuri. B., Cherny, Dmitry I., Demin, Victor V., Sverdlov, Eugene D.

“…R-loops formed by short RNA transcripts have been imaged by atomic force microscopy (AFM) at a constant force in the height mode. The technique was applied to…”
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Electron and scanning force microscopy studies of alterations in supercoiled DNA tertiary structure by Cherny, Dmitry I, Jovin, Thomas M

“…The configuration of supercoiled DNA (scDNA) was investigated by electron microscopy and scanning force microscopy. Changes in configuration were induced by…”
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Dynamic interactions of p53 with DNA in solution by time-lapse atomic force microscopy by Jiao, Y, Cherny, D I, Heim, G, Jovin, T M, Schäffer, T E

“…Dynamic interactions of the tumor suppressor protein p53 with a DNA fragment containing a p53-specific recognition sequence were directly observed by…”
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Scanning force microscopy of the complexes of p53 core domain with supercoiled DNA by Jett, S D, Cherny, D I, Subramaniam, V, Jovin, T M

“…We used scanning force microscopy to analyse the interaction of the core domain of the tumor suppressor protein p53 (p53CD, amino acid residues 94 to 312),…”
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Diversity of Vicia faba circular mtDNA in whole plants and suspension cultures by Negruk, V.I, Eisner, G.I, Redichkina, T.D, Dumanskaya, N.N, Cherny, D.I, Alexandrov, A.A, Shemyakin, M.F, Butenko, R.G

“…A comparative analysis of the Vicia faba mitochondrial genome in whole plants and in longterm suspension culture has been conducted. Restriction fragment…”
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DNA bending due to specific p53 and p53 core domain-DNA interactions visualized by electron microscopy by Cherny, Dmitry I, Striker, George, Subramaniam, Vinod, Jett, Stephen D, Paleček, Emil, Jovin, Thomas M

“…We have used transmission electron microscopy to analyze the specificity and the extent of DNA bending upon binding of full-length wild-type human tumor…”
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Analysis of Various Sequence-Specific Triplexes by Electron and Atomic Force Microscopies by Cherny, Dimitry I., Fourcade, Alain, Svinarchuk, Fedor, Nielsen, Peter E., Malvy, Claude, Delain, Etienne

“…Sequence-specific interactions of 20-mer G,A-containing triple helix-forming oligonucleotides (TFOs) and bis-PNAs (peptide nucleic acids) with double-stranded…”
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Alternate Strand DNA Triple Helix-mediated Inhibition of HIV-1 U5 Long Terminal Repeat Integration in Vitro by Bouziane, M, Cherny, D I, Mouscadet, J F, Auclair, C

“…Integration of the human immunodeficiency virus (HIV) DNA into the host genome is an obligatory process in the replicative life cycle of the virus. This event…”
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Electron microscopy mapping of oligopurine tracts in duplex DNA by peptide nucleic acid targeting by Demidov, Vadim V., Cherny, Dmitry I., Kurakin, Alexey V., Yavnilovich, Michael V., Malkov, Vladislav A., Frank-Kamenetskii, Maxim D., Sdnnichsen, Spren H., Nielsen, Peter E.

“…Biotinylated homopyrlmidlne decamer peptide nucleic acids (PNAs) are shown to form sequence-specific and stable complexes with complementary oligopurine…”
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Localization of low-melting regions in phage T7 DNA by Lyamichev, V. I., Panyutin, I. G., Cherny, D. I., Lyubchenko, Yu. L.

“…Specific fragmentation of T7 DNA at glyoxal–fixed denatured regions by the S1 endonuclease followed by restriction analysis made it possible to localize four…”
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Circular DNAs in mitochondria of Vicia faba by Eisner, G.I., Negruk, V.I., Cherny, D.I., Alexandrov, A.A., Shemyakin, M.F., Butenko, R.G.

“…Electron microscopic analysis of Vicia faba mitochondrial DNA revealed two different types of circular DNA molecules. The class of small DNA molecules…”
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Identification of the product of phage 434 cro gene by Sverdlov, E.D., Patrushev, L.I., Shemyakin, M.F., Alexandrov, A.A., Cherny, D.I.

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Transcription of colicin E1 plasmid: electron-microscopic mapping of promoters by Naumova, G N, Golovanov, E I, Cherny, D I, Alexandrov, A A

“…The promoters of ColE1 plasmid DNA have been localized. Their position has been determined relative to the functional map of the plasmid. The direction of…”
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Electron microscopy visualization of oligonucleotide binding to duplex DNA via triplex formation by Cherny, D I, Malkov, V A, Volodin, A A, Frank-Kamenetskii, M D

“…Using biotinylated oligonucleotides and streptavidin as a marker, we have visualized, with the help of electron microscopy, the triplex formation. We used the…”
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Testing the quality of electron microscope mapping data for DNA molecules with sequence-specific ligands by Podtelezhnikov, A A, Kurakin, A V, Vologodskii, A V, Cherny, D I

“…A procedure for the testing of Electron Microscope (EM) mapping data for DNA molecules with site-specific bound ligands is suggested. The difficulty of…”
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Isolation and characterization of minicircular DNAs found in mitochondrial fraction of Vicia faba by Negruk, V.I., Cherny, D.I., Nikiforova, I.D., Aleksandrov, A.A., Butenko, R.G.

“…First detailed analysis of small DNA species from higher plant mitochondria was done on Zea mays . It was found that normal and 3 types of male-sterile Zea…”
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Role of tumor suppressor p53 domains in selective binding to supercoiled DNA by Brázdová, Marie, Paleček, Jan, Cherny, Dmitry I., Billová, Sabina, Fojta, Miroslav, Pečinka, Petr, Vojtěšek, Bořivoj, Jovin, Thomas M., Paleček, Emil

“…We showed previously that bacterially expressed full‐length human wild‐type p53b(1–393) binds selectively to supercoiled (sc)DNA in sc/linear DNA competition…”
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Amyloid fibrils from the mammalian protein prothymosin α by Pavlov, Nikolai A., Cherny, Dmitry I., Heim, Gudrun, Jovin, Thomas M., Subramaniam, Vinod

“…Mammalian prothymosin α, a small (12 kDa) and extremely acidic protein (p I 3.5), is a member of the growing family of ‘natively’ unfolded proteins. We…”
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High-density fluorescently labeled rolling-circle amplicons for DNA diagnostics by Smolina, Irina V., Cherny, Dmitry I., Nietupski, Raymond M., Beals, Thomas, Smith, James H., Lane, David J., Broude, Natalia E., Demidov, Vadim V.

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