Search Results - "Chernobrovkin, Alexey L."

Proteogenomics of Malignant Melanoma Cell Lines: The Effect of Stringency of Exome Data Filtering on Variant Peptide Identification in Shotgun Proteomics by Lobas, Anna A, Pyatnitskiy, Mikhail A, Chernobrovkin, Alexey L, Ilina, Irina Y, Karpov, Dmitry S, Solovyeva, Elizaveta M, Kuznetsova, Ksenia G, Ivanov, Mark V, Lyssuk, Elena Y, Kliuchnikova, Anna A, Voronko, Olga E, Larin, Sergey S, Zubarev, Roman A, Gorshkov, Mikhail V, Moshkovskii, Sergei A

“…The identification of genetically encoded variants at the proteome level is an important problem in cancer proteogenomics. The generation of customized protein…”
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Detection of viral proteins in human cells lines by xeno-proteomics: elimination of the last valid excuse for not testing every cellular proteome dataset for viral proteins by Chernobrovkin, Alexey L, Zubarev, Roman A

“…Cell cultures used routinely in proteomic experiments may contain proteins from other species because of infection, transfection or just contamination. Since…”
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Proteomics-Compatible Fourier Transform Isotopic Ratio Mass Spectrometry of Polypeptides by Gharibi, Hassan, Chernobrovkin, Alexey L., Saei, Amir Ata, Zhang, Xuepei, Gaetani, Massimiliano, Makarov, Alexander A., Zubarev, Roman A.

“…Measuring the relative abundances of heavy stable isotopes of the elements C, H, N, and O in proteins is of interest in environmental science, archeology,…”
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Abnormal (Hydroxy)proline Deuterium Content Redefines Hydrogen Chemical Mass by Gharibi, Hassan, Chernobrovkin, Alexey L, Eriksson, Gunilla, Saei, Amir Ata, Timmons, Zena, Kitchener, Andrew C, Kalthoff, Daniela C, Lidén, Kerstin, Makarov, Alexander A, Zubarev, Roman A

“…Analyzing the δ2H values in individual amino acids of proteins extracted from vertebrates, we unexpectedly found in some samples, notably bone collagen from…”
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A Tale of Two Tails: Efficient Profiling of Protein Degraders by Specific Functional and Target Engagement Readouts by Chernobrovkin, Alexey L, Cázares-Körner, Cindy, Friman, Tomas, Caballero, Isabel Martin, Amadio, Daniele, Martinez Molina, Daniel

“…Targeted protein degradation represents an area of great interest, potentially offering improvements with respect to dosing, side effects, drug resistance, and…”
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Proteogenomics of Adenosine-to-Inosine RNA Editing in the Fruit Fly by Kuznetsova, Ksenia G, Kliuchnikova, Anna A, Ilina, Irina U, Chernobrovkin, Alexey L, Novikova, Svetlana E, Farafonova, Tatyana E, Karpov, Dmitry S, Ivanov, Mark V, Goncharov, Anton O, Ilgisonis, Ekaterina V, Voronko, Olga E, Nasaev, Shamsudin S, Zgoda, Victor G, Zubarev, Roman A, Gorshkov, Mikhail V, Moshkovskii, Sergei A

“…Adenosine-to-inosine RNA editing is one of the most common types of RNA editing, a posttranscriptional modification made by special enzymes. We present a…”
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Exome-Driven Characterization of the Cancer Cell Lines at the Proteome Level: The NCI-60 Case Study by Karpova, Maria A, Karpov, Dmitry S, Ivanov, Mark V, Pyatnitskiy, Mikhail A, Chernobrovkin, Alexey L, Lobas, Anna A, Lisitsa, Andrey V, Archakov, Alexander I, Gorshkov, Mikhail V, Moshkovskii, Sergei A

“…Cancer genome deviates significantly from the reference human genome, and thus a search against standard genome databases in cancer cell proteomics fails to…”
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Methionine to isothreonine conversion as a source of false discovery identifications of genetically encoded variants in proteogenomics by Chernobrovkin, Alexey L., Kopylov, Arthur T., Zgoda, Victor G., Moysa, Alexander A., Pyatnitskiy, Mikhail A., Kuznetsova, Ksenia G., Ilina, Irina Y., Karpova, Maria A., Karpov, Dmitry S., Veselovsky, Alexander V., Ivanov, Mark V., Gorshkov, Mikhail V., Archakov, Alexander I., Moshkovskii, Sergei A.

“…Searching deep proteome data for 9 NCI-60 cancer cell lines obtained earlier by Moghaddas Gholami et al. (Cell Reports, 2013) against a database from cancer…”
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How well can morphology assess cell death modality? A proteomics study by Chernobrovkin, Alexey L, Zubarev, Roman A

“…While the focus of attempts to classify cell death programs has finally shifted in 2010s from microscopy-based morphological characteristics to biochemical…”
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Detection of Viral Proteins in Human Cells Lines by Xeno-Proteomics: Elimination of the Last Valid Excuse for Not Testing Every Cellular Proteome Dataset for Viral Proteins: e91433 by Chernobrovkin, Alexey L, Zubarev, Roman A

“…Cell cultures used routinely in proteomic experiments may contain proteins from other species because of infection, transfection or just contamination. Since…”
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