Search Results - "Cheng Guo"

SpatialDWLS: accurate deconvolution of spatial transcriptomic data by Dong, Rui, Yuan, Guo-Cheng

“…Recent development of spatial transcriptomic technologies has made it possible to characterize cellular heterogeneity with spatial information. However, the…”
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GiniClust: detecting rare cell types from single-cell gene expression data with Gini index by Jiang, Lan, Chen, Huidong, Pinello, Luca, Yuan, Guo-Cheng

“…High-throughput single-cell technologies have great potential to discover new cell types; however, it remains challenging to detect rare cell types that are…”
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Chaos analysis and asymptotic stability of generalized Caputo fractional differential equations by Baleanu, Dumitru, Wu, Guo–Cheng, Zeng, Sheng–Da

“…•A semi-analytical method based on new Adomian polynomials is proposed.•Chaos in generalized Caputo fractional differential equations is numerically…”
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Giotto: a toolbox for integrative analysis and visualization of spatial expression data by Dries, Ruben, Zhu, Qian, Dong, Rui, Eng, Chee-Huat Linus, Li, Huipeng, Liu, Kan, Fu, Yuntian, Zhao, Tianxiao, Sarkar, Arpan, Bao, Feng, George, Rani E, Pierson, Nico, Cai, Long, Yuan, Guo-Cheng

“…Spatial transcriptomic and proteomic technologies have provided new opportunities to investigate cells in their native microenvironment. Here we present…”
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GiniClust2: a cluster-aware, weighted ensemble clustering method for cell-type detection by Tsoucas, Daphne, Yuan, Guo-Cheng

“…Single-cell analysis is a powerful tool for dissecting the cellular composition within a tissue or organ. However, it remains difficult to detect rare and…”
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Discrete fractional logistic map and its chaos by Wu, Guo-Cheng, Baleanu, Dumitru

“…A discrete fractional logistic map is proposed in the left Caputo discrete delta’s sense. The new model holds discrete memory. The bifurcation diagrams are…”
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Accurate estimation of cell-type composition from gene expression data by Tsoucas, Daphne, Dong, Rui, Chen, Haide, Zhu, Qian, Guo, Guoji, Yuan, Guo-Cheng

“…The rapid development of single-cell transcriptomic technologies has helped uncover the cellular heterogeneity within cell populations. However, bulk RNA-seq…”
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GiniClust3: a fast and memory-efficient tool for rare cell type identification by Dong, Rui, Yuan, Guo-Cheng

“…With the rapid development of single-cell RNA sequencing technology, it is possible to dissect cell-type composition at high resolution. A number of methods…”
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Epigenetic regulation in plant abiotic stress responses by Chang, Ya‐Nan, Zhu, Chen, Jiang, Jing, Zhang, Huiming, Zhu, Jian‐Kang, Duan, Cheng‐Guo

“…In eukaryotic cells, gene expression is greatly influenced by the dynamic chromatin environment. Epigenetic mechanisms, including covalent modifications to DNA…”
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Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data by Zhu, Qian, Shah, Sheel, Dries, Ruben, Cai, Long, Yuan, Guo-Cheng

“…Combining single-cell RNA-seq with sequential single-molecule FISH defines the influence of spatial location on cell identity. How intrinsic gene-regulatory…”
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Modulating Electronic Metal‐Support Interactions to Boost Visible‐Light‐Driven Hydrolysis of Ammonia Borane: Nickel‐Platinum Nanoparticles Supported on Phosphorus‐Doped Titania by Wan, Chao, Li, Gui, Wang, Jiapei, Xu, Lixin, Cheng, Dang‐guo, Chen, Fengqiu, Asakura, Yusuke, Kang, Yunqing, Yamauchi, Yusuke

“…Ammonia borane (AB) is a promising material for chemical H2 storage owing to its high H2 density (up to 19.6 wt %). However, the development of an efficient…”
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Dissecting super-enhancer hierarchy based on chromatin interactions by Huang, Jialiang, Li, Kailong, Cai, Wenqing, Liu, Xin, Zhang, Yuannyu, Orkin, Stuart H., Xu, Jian, Yuan, Guo-Cheng

“…Recent studies have highlighted super-enhancers (SEs) as important regulatory elements for gene expression, but their intrinsic properties remain incompletely…”
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Discrete tempered fractional calculus for new chaotic systems with short memory and image encryption by Abdeljawad, Thabet, Banerjee, Santo, Wu, Guo–Cheng

“…Fractional derivatives with memory effects have been widely used in image processing. This study investigates a discrete analogy of tempered fractional…”
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Collocation methods for terminal value problems of tempered fractional differential equations by Shiri, Babak, Wu, Guo-Cheng, Baleanu, Dumitru

“…A class of tempered fractional differential equations with terminal value problems are investigated in this paper. Discretized collocation methods on piecewise…”
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Challenges and emerging directions in single-cell analysis by Yuan, Guo-Cheng, Cai, Long, Elowitz, Michael, Enver, Tariq, Fan, Guoping, Guo, Guoji, Irizarry, Rafael, Kharchenko, Peter, Kim, Junhyong, Orkin, Stuart, Quackenbush, John, Saadatpour, Assieh, Schroeder, Timm, Shivdasani, Ramesh, Tirosh, Itay

“…Single-cell analysis is a rapidly evolving approach to characterize genome-scale molecular information at the individual cell level. Development of single-cell…”
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Distributed Nesterov Gradient and Heavy-Ball Double Accelerated Asynchronous Optimization by Li, Huaqing, Cheng, Huqiang, Wang, Zheng, Wu, Guo-Cheng

“…In this article, we come up with a novel Nesterov gradient and heavy-ball double accelerated distributed synchronous optimization algorithm, called NHDA, and…”
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A novel 3D paper-based microfluidic electrochemical glucose biosensor based on rGO-TEPA/PB sensitive film by Cao, Liangli, Han, Guo-Cheng, Xiao, Haolin, Chen, Zhencheng, Fang, Cheng

“…A novel 3D paper-based microfluidic screen-printed electrode (SPE) composed of two layers was constructed by photolithography and screen-printing technology…”
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Terminal value problems for the nonlinear systems of fractional differential equations by Shiri, Babak, Wu, Guo–Cheng, Baleanu, Dumitru

“…Terminal value problems of fractional nonlinear systems are studied in this paper. The existence and uniqueness are given. The regularity of the solution is…”
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Single-cell nuclear architecture across cell types in the mouse brain by Takei, Yodai, Zheng, Shiwei, Yun, Jina, Shah, Sheel, Pierson, Nico, White, Jonathan, Schindler, Simone, Tischbirek, Carsten H, Yuan, Guo-Cheng, Cai, Long

“…Diverse cell types in tissues have distinct gene expression programs, chromatin states, and nuclear architectures. To correlate such multimodal information…”
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Antibody-mediated inhibition of MICA and MICB shedding promotes NK cell-driven tumor immunity by Ferrari de Andrade, Lucas, Tay, Rong En, Pan, Deng, Luoma, Adrienne M, Ito, Yoshinaga, Badrinath, Soumya, Tsoucas, Daphne, Franz, Bettina, May, Jr, Kenneth F, Harvey, Christopher J, Kobold, Sebastian, Pyrdol, Jason W, Yoon, Charles, Yuan, Guo-Cheng, Hodi, F Stephen, Dranoff, Glenn, Wucherpfennig, Kai W

“…MICA and MICB are expressed by many human cancers as a result of cellular stress, and can tag cells for elimination by cytotoxic lymphocytes through natural…”
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