Search Results - "Chen, Andrew A"

Image harmonization: A review of statistical and deep learning methods for removing batch effects and evaluation metrics for effective harmonization by Hu, Fengling, Chen, Andrew A., Horng, Hannah, Bashyam, Vishnu, Davatzikos, Christos, Alexander-Bloch, Aaron, Li, Mingyao, Shou, Haochang, Satterthwaite, Theodore D., Yu, Meichen, Shinohara, Russell T.

“…•Batch effects introduce significant confounding in multi-batch neuroimaging data.•Removal of batch effects is critical for reproducibility and…”
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Privacy-preserving harmonization via distributed ComBat by Chen, Andrew A., Luo, Chongliang, Chen, Yong, Shinohara, Russell T., Shou, Haochang

“…Challenges in clinical data sharing and the need to protect data privacy have led to the development and popularization of methods that do not require directly…”
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Harmonizing functional connectivity reduces scanner effects in community detection by Chen, Andrew A., Srinivasan, Dhivya, Pomponio, Raymond, Fan, Yong, Nasrallah, Ilya M., Resnick, Susan M., Beason-Held, Lori L., Davatzikos, Christos, Satterthwaite, Theodore D., Bassett, Dani S., Shinohara, Russell T., Shou, Haochang

“…Community detection on graphs constructed from functional magnetic resonance imaging (fMRI) data has led to important insights into brain functional…”
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PARE: A framework for removal of confounding effects from any distance-based dimension reduction method by Chen, Andrew A, Clark, Kelly, Dewey, Blake E, DuVal, Anna, Pellegrini, Nicole, Nair, Govind, Jalkh, Youmna, Khalil, Samar, Zurawski, Jon, Calabresi, Peter A, Reich, Daniel S, Bakshi, Rohit, Shou, Haochang, Shinohara, Russell T

“…Dimension reduction tools preserving similarity and graph structure such as t-SNE and UMAP can capture complex biological patterns in high-dimensional data…”
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Functional connectivity development along the sensorimotor-association axis enhances the cortical hierarchy by Luo, Audrey C., Sydnor, Valerie J., Pines, Adam, Larsen, Bart, Alexander-Bloch, Aaron F., Cieslak, Matthew, Covitz, Sydney, Chen, Andrew A., Esper, Nathalia Bianchini, Feczko, Eric, Franco, Alexandre R., Gur, Raquel E., Gur, Ruben C., Houghton, Audrey, Hu, Fengling, Keller, Arielle S., Kiar, Gregory, Mehta, Kahini, Salum, Giovanni A., Tapera, Tinashe, Xu, Ting, Zhao, Chenying, Salo, Taylor, Fair, Damien A., Shinohara, Russell T., Milham, Michael P., Satterthwaite, Theodore D.

“…Human cortical maturation has been posited to be organized along the sensorimotor-association axis, a hierarchical axis of brain organization that spans from…”
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Immune aging in multiple sclerosis is characterized by abnormal CD4 T cell activation and increased frequencies of cytotoxic CD4 T cells with advancing age by Zuroff, Leah, Rezk, Ayman, Shinoda, Koji, Espinoza, Diego A., Elyahu, Yehezqel, Zhang, Bo, Chen, Andrew A., Shinohara, Russell T., Jacobs, Dina, Alcalay, Roy N., Tropea, Thomas F., Chen-Plotkin, Alice, Monsonego, Alon, Li, Rui, Bar-Or, Amit

“…Immunosenescence (ISC) describes age-related changes in immune-system composition and function. Multiple sclerosis (MS) is a lifelong inflammatory condition…”
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Robust Image Population Based Stain Color Normalization: How Many Reference Slides Are Enough? by Agraz, Jose L., Grenko, Caleb M., Chen, Andrew A., Viaene, Angela N., Nasrallah, MacLean D., Pati, Sarthak, Kurc, Tahsin, Saltz, Joel, Feldman, Michael D., Akbari, Hamed, Sharma, Parth, Shinohara, Russell T., Bakas, Spyridon

“…Histopathologic evaluation of Hematoxylin & Eosin (H&E) stained slides is essential for disease diagnosis, revealing tissue morphology, structure, and cellular…”
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Pharmacologic prophylaxis and risk factors for intraoperative floppy-iris syndrome in phacoemulsification performed by resident physicians by Chen, Andrew A., MD, MS, Kelly, John P., PhD, Bhandari, Anuja, MD, Wu, Michael C., MD

“…Purpose To determine the incidence of intraoperative floppy-iris syndrome (IFIS) in patients taking tamsulosin who had surgery by resident physicians, the…”
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Mitigating site effects in covariance for machine learning in neuroimaging data by Chen, Andrew A., Beer, Joanne C., Tustison, Nicholas J., Cook, Philip A., Shinohara, Russell T., Shou, Haochang

“…To acquire larger samples for answering complex questions in neuroscience, researchers have increasingly turned to multi‐site neuroimaging studies. However,…”
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First-generation clinical dual-source photon-counting CT: ultra-low-dose quantitative spectral imaging by Liu, Leening P., Shapira, Nadav, Chen, Andrew A., Shinohara, Russell T., Sahbaee, Pooyan, Schnall, Mitchell, Litt, Harold I., Noël, Peter B.

“…Objective Evaluation of image characteristics at ultra-low radiation dose levels of a first-generation dual-source photon-counting computed tomography (PCCT)…”
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Quantitative regional associations between remodeling, modeling, and osteocyte apoptosis and density in rabbit tibial midshafts by Hedgecock, Nicole L, Hadi, Tamer, Chen, Andrew A, Curtiss, Shane B, Martin, R. Bruce, Hazelwood, Scott J

“…Abstract Evidence suggests that osteocyte apoptosis is involved in the adaptive response of bone, although the specific role of osteocytes in the signaling…”
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Biomechanics of the rabbit knee and ankle: Muscle, ligament, and joint contact force predictions by Grover, Dustin M, Chen, Andrew A, Hazelwood, Scott J

“…Abstract Mathematical models of small animals that predict in vivo forces acting on the lower extremities are critical for studies of musculoskeletal…”
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Generalizable Links Between Borderline Personality Traits and Functional Connectivity by Shafiei, Golia, Keller, Arielle S., Bertolero, Maxwell, Shanmugan, Sheila, Bassett, Dani S., Chen, Andrew A., Covitz, Sydney, Houghton, Audrey, Luo, Audrey, Mehta, Kahini, Salo, Taylor, Shinohara, Russell T., Fair, Damien, Hallquist, Michael N., Satterthwaite, Theodore D.

“…Symptoms of borderline personality disorder (BPD) often manifest during adolescence, but the underlying relationship between these debilitating symptoms and…”
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DeepComBat: A statistically motivated, hyperparameter‐robust, deep learning approach to harmonization of neuroimaging data by Hu, Fengling, Lucas, Alfredo, Chen, Andrew A., Coleman, Kyle, Horng, Hannah, Ng, Raymond W. S., Tustison, Nicholas J., Davis, Kathryn A., Shou, Haochang, Li, Mingyao, Shinohara, Russell T.

“…Neuroimaging data acquired using multiple scanners or protocols are increasingly available. However, such data exhibit technical artifacts across batches which…”
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Similarity-based multimodal regression by Chen, Andrew A, Weinstein, Sarah M, Adebimpe, Azeez, Gur, Ruben C, Gur, Raquel E, Merikangas, Kathleen R, Satterthwaite, Theodore D, Shinohara, Russell T, Shou, Haochang

“…To better understand complex human phenotypes, large-scale studies have increasingly collected multiple data modalities across domains such as imaging, mobile…”
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Is there a role for FISH in the management and surveillance of patients with upper tract transitional-cell carcinoma? by Chen, Andrew A, Grasso, Michael

“…Fluorescence in-situ hybridization (FISH) assay has been approved by the U.S. Food and Drug Administration for the detection of recurrent transitional-cell…”
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Relationship between MRI brain-age heterogeneity, cognition, genetics and Alzheimer’s disease neuropathology by Antoniades, Mathilde, Srinivasan, Dhivya, Wen, Junhao, Erus, Guray, Abdulkadir, Ahmed, Mamourian, Elizabeth, Melhem, Randa, Hwang, Gyujoon, Cui, Yuhan, Govindarajan, Sindhuja Tirumalai, Chen, Andrew A., Zhou, Zhen, Yang, Zhijian, Chen, Jiong, Pomponio, Raymond, Sotardi, Susan, An, Yang, Bilgel, Murat, LaMontagne, Pamela, Singh, Ashish, Benzinger, Tammie, Beason-Held, Lori, Marcus, Daniel S., Yaffe, Kristine, Launer, Lenore, Morris, John C., Tosun, Duygu, Ferrucci, Luigi, Bryan, R. Nick, Resnick, Susan M., Habes, Mohamad, Wolk, David, Fan, Yong, Nasrallah, Ilya M., Shou, Haochang, Davatzikos, Christos

“…Brain ageing is highly heterogeneous, as it is driven by a variety of normal and neuropathological processes. These processes may differentially affect…”
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Optimized Whole-Slide-Image H&E Stain Normalization: A Step Towards Big Data Integration in Digital Pathology by Agraz, Jose L., Agraz, Carlos, Chen, Andrew A., Rice, Charles, Pozos, Robert S., Aelterman, Sven, Tan, Amanda, Viaene, Angela N., Nasrallah, MacLean P., Sharma, Parth, Grenko, Caleb M., Kurc, Tahsin, Saltz, Joel, Feldman, Michael D., Akbari, Hamed, Shinohara, Russell T., Bakas, Spyridon, Wilson, Parker

“…In the medical diagnostics domain, pathology and histology are pivotal for the precise identification of diseases. Digital histopathology, enhanced by…”
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Device Characteristics of Organic Light-Emitting Diodes Comprising Terfluorene Modified with Triphenyltriazine by Chen, Andrew C.-A, Wallace, Jason U, Klubek, Kevin P, Madaras, Marcel B, Tang, Ching W, Chen, Shaw H

“…The characteristics of a series of organic blue light-emitting diodes comprising terfluorene were investigated. The composition of the emitter layer was either…”
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Light-Emitting Organic Materials with Variable Charge Injection and Transport Properties by Chen, Andrew C.-A, Madaras, Marcel B, Klubek, Kevin P, Wallace, Jason U, Wei, Simon K.-H, Zeng, Lichang, Blanton, Thomas N, Chen, Shaw H

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