Search Results - "Chaichoompu, Kridsadakorn"

EpiScanpy: integrated single-cell epigenomic analysis by Danese, Anna, Richter, Maria L., Chaichoompu, Kridsadakorn, Fischer, David S., Theis, Fabian J., Colomé-Tatché, Maria

“…EpiScanpy is a toolkit for the analysis of single-cell epigenomic data, namely single-cell DNA methylation and single-cell ATAC-seq data. To address the…”
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WASP: a Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations by Wangkumhang, Pongsakorn, Chaichoompu, Kridsadakorn, Ngamphiw, Chumpol, Ruangrit, Uttapong, Chanprasert, Juntima, Assawamakin, Anunchai, Tongsima, Sissades

“…Allele-specific (AS) Polymerase Chain Reaction is a convenient and inexpensive method for genotyping Single Nucleotide Polymorphisms (SNPs) and mutations. It…”
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Insight into the peopling of Mainland Southeast Asia from Thai population genetic structure by Wangkumhang, Pongsakorn, Shaw, Philip James, Chaichoompu, Kridsadakorn, Ngamphiw, Chumpol, Assawamakin, Anunchai, Nuinoon, Manit, Sripichai, Orapan, Svasti, Saovaros, Fucharoen, Suthat, Praphanphoj, Verayuth, Tongsima, Sissades

“…There is considerable ethno-linguistic and genetic variation among human populations in Asia, although tracing the origins of this diversity is complicated by…”
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Iterative pruning PCA improves resolution of highly structured populations by Intarapanich, Apichart, Shaw, Philip J, Assawamakin, Anunchai, Wangkumhang, Pongsakorn, Ngamphiw, Chumpol, Chaichoompu, Kridsadakorn, Piriyapongsa, Jittima, Tongsima, Sissades

“…Non-random patterns of genetic variation exist among individuals in a population owing to a variety of evolutionary factors. Therefore, populations are…”
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Genetic and Epidemiological Insights into RAB32-Linked Parkinson's Disease by Radefeldt, Mandy, Lemke, Sabrina, Chaichoompu, Kridsadakorn, Paul, Jefri Jeya, Curado, Filipa, Valzania, Franco, Cavallieri, Francesco, Fioravanti, Valentina, Valente, Enza Maria, Avenali, Micol, Negrotti, Anna, Hanagasi, Hasmet A, Thonke, Sven, Matarazzo, Michele, Panzavolta, Andrea, Cerami, Chiara, Westenberger, Ana, Klein, Christine, Bauer, Peter, Beetz, Christian

“…The p.Ser71Arg RAB32 variant was recently associated with Parkinson's disease (PD). The aim was to investigate the presence of RAB32 variants in a large…”
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A different view on fine-scale population structure in Western African populations by Chaichoompu, Kridsadakorn, Abegaz, Fentaw, Cavadas, Bruno, Fernandes, Verónica, Müller-Myhsok, Bertram, Pereira, Luísa, Van Steen, Kristel

“…Due to its long genetic evolutionary history, Africans exhibit more genetic variation than any other population in the world. Their genetic diversity further…”
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Principals about principal components in statistical genetics by Abegaz, Fentaw, Chaichoompu, Kridsadakorn, Génin, Emmanuelle, Fardo, David W, König, Inke R, Mahachie John, Jestinah M, Van Steen, Kristel

“…Abstract Principal components (PCs) are widely used in statistics and refer to a relatively small number of uncorrelated variables derived from an initial pool…”
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Fine-scale subpopulation detection via an SNP-based unsupervised method: A case study on the 1000 Genomes Project resources by Chaichoompu, Kridsadakorn, Wilantho, Alisa, Wangkumhang, Pongsakorn, Tongsima, Sissades, Cavadas, Bruno, Pereira, Luísa, Van Steen, Kristel

“…SNP-based information is used in several existing clustering methods to detect shared genetic ancestry or to identify population substructure. Here, we present…”
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IPCAPS: an R package for iterative pruning to capture population structure by Chaichoompu, Kridsadakorn, Abegaz, Fentaw, Tongsima, Sissades, Shaw, Philip James, Sakuntabhai, Anavaj, Pereira, Luísa, Van Steen, Kristel

“…Resolving population genetic structure is challenging, especially when dealing with closely related or geographically confined populations. Although Principal…”
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Insight into the Peopling of Mainland Southeast Asia from Thai Population Genetic Structure: e79522 by Wangkumhang, Pongsakorn, Shaw, Philip James, Chaichoompu, Kridsadakorn, Ngamphiw, Chumpol, Assawamakin, Anunchai, Nuinoon, Manit, Sripichai, Orapan, Svasti, Saovaros, Fucharoen, Suthat, Praphanphoj, Verayuth

“…There is considerable ethno-linguistic and genetic variation among human populations in Asia, although tracing the origins of this diversity is complicated by…”
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Speedup bioinformatics applications on multicore-based processor using vectorizing and multithreading strategies by Chaichoompu, Kridsadakorn, Kittitornkun, Surin, Tongsima, Sissades

“…Many computational intensive bioinformatics software, such as multiple sequence alignment, population structure analysis, etc., written in C/C++ are not…”
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MT-clustalW: multithreading multiple sequence alignment by Chaichoompu, Kridsadakorn, Kittitornkun, Surin, Tongsima, Sissades

“…ClustalW is the most widely used tool for aligning multiple protein or nucleotide sequences. The alignment is achieved via three stages: pairwise alignment,…”
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Multithreaded ClustalW with Improved Optimization for Intel Multi-core Processor by Chaichoompu, K., Kittitornkun, S.

“…This paper presents the methodology that assists the compiler to optimize ClustalW; the most widely used tool for aligning multiple text-based protein or…”
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MT-ClustalW: multithreading multiple sequence alignment by Chaichoompu, K., Kittitornkun, S., Tongsima, S.

“…ClustalW is the most widely used tool for aligning multiple protein or nucleotide sequences. The alignment is achieved via three stages: pairwise alignment,…”
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