Search Results - "Catherine Lawson"

Do attributes in the physical environment influence children's physical activity? A review of the literature by Davison, Kirsten Krahnstoever, Lawson, Catherine T

“…Many youth today are physically inactive. Recent attention linking the physical or built environment to physical activity in adults suggests an investigation…”
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RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences by Burley, Stephen K, Bhikadiya, Charmi, Bi, Chunxiao, Bittrich, Sebastian, Chen, Li, Crichlow, Gregg V, Christie, Cole H, Dalenberg, Kenneth, Di Costanzo, Luigi, Duarte, Jose M, Dutta, Shuchismita, Feng, Zukang, Ganesan, Sai, Goodsell, David S, Ghosh, Sutapa, Green, Rachel Kramer, Guranović, Vladimir, Guzenko, Dmytro, Hudson, Brian P, Lawson, Catherine L, Liang, Yuhe, Lowe, Robert, Namkoong, Harry, Peisach, Ezra, Persikova, Irina, Randle, Chris, Rose, Alexander, Rose, Yana, Sali, Andrej, Segura, Joan, Sekharan, Monica, Shao, Chenghua, Tao, Yi-Ping, Voigt, Maria, Westbrook, John D, Young, Jasmine Y, Zardecki, Christine, Zhuravleva, Marina

“…Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), the US data center for the global PDB archive and a founding…”
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RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning by Burley, Stephen K, Bhikadiya, Charmi, Bi, Chunxiao, Bittrich, Sebastian, Chao, Henry, Chen, Li, Craig, Paul A, Crichlow, Gregg V, Dalenberg, Kenneth, Duarte, Jose M, Dutta, Shuchismita, Fayazi, Maryam, Feng, Zukang, Flatt, Justin W, Ganesan, Sai, Ghosh, Sutapa, Goodsell, David S, Green, Rachel Kramer, Guranovic, Vladimir, Henry, Jeremy, Hudson, Brian P, Khokhriakov, Igor, Lawson, Catherine L, Liang, Yuhe, Lowe, Robert, Peisach, Ezra, Persikova, Irina, Piehl, Dennis W, Rose, Yana, Sali, Andrej, Segura, Joan, Sekharan, Monica, Shao, Chenghua, Vallat, Brinda, Voigt, Maria, Webb, Ben, Westbrook, John D, Whetstone, Shamara, Young, Jasmine Y, Zalevsky, Arthur, Zardecki, Christine

“…The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), founding member of the Worldwide Protein Data Bank (wwPDB), is the US…”
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Comparing cryo-EM structures by Lawson, Catherine L., Chiu, Wah

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Outcome of the First Electron Microscopy Validation Task Force Meeting by Henderson, Richard, Sali, Andrej, Baker, Matthew L., Carragher, Bridget, Devkota, Batsal, Downing, Kenneth H., Egelman, Edward H., Feng, Zukang, Frank, Joachim, Grigorieff, Nikolaus, Jiang, Wen, Ludtke, Steven J., Medalia, Ohad, Penczek, Pawel A., Rosenthal, Peter B., Rossmann, Michael G., Schmid, Michael F., Schröder, Gunnar F., Steven, Alasdair C., Stokes, David L., Westbrook, John D., Wriggers, Willy, Yang, Huanwang, Young, Jasmine, Berman, Helen M., Chiu, Wah, Kleywegt, Gerard J., Lawson, Catherine L.

“…This Meeting Review describes the proceedings and conclusions from the inaugural meeting of the Electron Microscopy Validation Task Force organized by the…”
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The Nucleic Acid Knowledgebase: a new portal for 3D structural information about nucleic acids by Lawson, Catherine L, Berman, Helen M, Chen, Li, Vallat, Brinda, Zirbel, Craig L

“…Abstract The Nucleic Acid Knowledgebase (nakb.org) is a new data resource, updated weekly, for experimentally determined 3D structures containing DNA and/or…”
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EMDataBank unified data resource for 3DEM by Lawson, Catherine L, Patwardhan, Ardan, Baker, Matthew L, Hryc, Corey, Garcia, Eduardo Sanz, Hudson, Brian P, Lagerstedt, Ingvar, Ludtke, Steven J, Pintilie, Grigore, Sala, Raul, Westbrook, John D, Berman, Helen M, Kleywegt, Gerard J, Chiu, Wah

“…Three-dimensional Electron Microscopy (3DEM) has become a key experimental method in structural biology for a broad spectrum of biological specimens from…”
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Forecasting bus ridership using a “Blended Approach” by Lawson, Catherine T., Muro, Alex, Krans, Eric

“…As sources of “Big Data” continue to grow, transportation planners and researchers seek to utilize these new resources. Given the current dependency on…”
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Evaluating the feasibility of a passive travel survey collection in a complex urban environment: Lessons learned from the New York City case study by Chen, Cynthia, Gong, Hongmian, Lawson, Catherine, Bialostozky, Evan

“…► Detection of auto and walking modes reaches over 90% in a complex urban environment such as New York City (NYC). ► Identification of trip purposes is 67% and…”
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Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop by Sali, Andrej, Berman, Helen M., Schwede, Torsten, Trewhella, Jill, Kleywegt, Gerard, Burley, Stephen K., Markley, John, Nakamura, Haruki, Adams, Paul, Bonvin, Alexandre M.J.J., Chiu, Wah, Peraro, Matteo Dal, Di Maio, Frank, Ferrin, Thomas E., Grünewald, Kay, Gutmanas, Aleksandras, Henderson, Richard, Hummer, Gerhard, Iwasaki, Kenji, Johnson, Graham, Lawson, Catherine L., Meiler, Jens, Marti-Renom, Marc A., Montelione, Gaetano T., Nilges, Michael, Nussinov, Ruth, Patwardhan, Ardan, Rappsilber, Juri, Read, Randy J., Saibil, Helen, Schröder, Gunnar F., Schwieters, Charles D., Seidel, Claus A.M., Svergun, Dmitri, Topf, Maya, Ulrich, Eldon L., Velankar, Sameer, Westbrook, John D.

“…Structures of biomolecular systems are increasingly computed by integrative modeling that relies on varied types of experimental data and theoretical…”
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Evolution of standardization and dissemination of cryo-EM structures and data jointly by the community, PDB, and EMDB by Chiu, Wah, Schmid, Michael F., Pintilie, Grigore D., Lawson, Catherine L.

“…Cryogenic electron microscopy (cryo-EM) methods began to be used in the mid-1970s to study thin and periodic arrays of proteins. Following a half-century of…”
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Validation of Structures in the Protein Data Bank by Gore, Swanand, Sanz García, Eduardo, Hendrickx, Pieter M.S., Gutmanas, Aleksandras, Westbrook, John D., Yang, Huanwang, Feng, Zukang, Baskaran, Kumaran, Berrisford, John M., Hudson, Brian P., Ikegawa, Yasuyo, Kobayashi, Naohiro, Lawson, Catherine L., Mading, Steve, Mak, Lora, Mukhopadhyay, Abhik, Oldfield, Thomas J., Patwardhan, Ardan, Peisach, Ezra, Sahni, Gaurav, Sekharan, Monica R., Sen, Sanchayita, Shao, Chenghua, Smart, Oliver S., Ulrich, Eldon L., Yamashita, Reiko, Quesada, Martha, Young, Jasmine Y., Nakamura, Haruki, Markley, John L., Berman, Helen M., Burley, Stephen K., Velankar, Sameer, Kleywegt, Gerard J.

“…The Worldwide PDB recently launched a deposition, biocuration, and validation tool: OneDep. At various stages of OneDep data processing, validation reports for…”
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RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D by Burley, Stephen K., Bhikadiya, Charmi, Bi, Chunxiao, Bittrich, Sebastian, Chen, Li, Crichlow, Gregg V., Duarte, Jose M., Dutta, Shuchismita, Fayazi, Maryam, Feng, Zukang, Flatt, Justin W., Ganesan, Sai J., Goodsell, David S., Ghosh, Sutapa, Kramer Green, Rachel, Guranovic, Vladimir, Henry, Jeremy, Hudson, Brian P., Lawson, Catherine L., Liang, Yuhe, Lowe, Robert, Peisach, Ezra, Persikova, Irina, Piehl, Dennis W., Rose, Yana, Sali, Andrej, Segura, Joan, Sekharan, Monica, Shao, Chenghua, Vallat, Brinda, Voigt, Maria, Westbrook, John D., Whetstone, Shamara, Young, Jasmine Y., Zardecki, Christine

“…The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), funded by the US National Science Foundation, National Institutes of…”
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New system for archiving integrative structures by Vallat, Brinda, Webb, Benjamin, Fayazi, Maryam, Voinea, Serban, Tangmunarunkit, Hongsuda, Ganesan, Sai J., Lawson, Catherine L., Westbrook, John D., Kesselman, Carl, Sali, Andrej, Berman, Helen M.

“…Structures of many complex biological assemblies are increasingly determined using integrative approaches, in which data from multiple experimental methods are…”
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Evaluation system and web infrastructure for the second cryo-EM model challenge by Kryshtafovych, Andriy, Adams, Paul D., Lawson, Catherine L., Chiu, Wah

“…An evaluation system and a web infrastructure were developed for the second cryo-EM model challenge. The evaluation system includes tools to validate…”
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Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge by Lawson, Catherine L., Kryshtafovych, Andriy, Adams, Paul D., Afonine, Pavel V., Baker, Matthew L., Barad, Benjamin A., Bond, Paul, Burnley, Tom, Cao, Renzhi, Cheng, Jianlin, Chojnowski, Grzegorz, Cowtan, Kevin, Dill, Ken A., DiMaio, Frank, Farrell, Daniel P., Fraser, James S., Herzik, Mark A., Hoh, Soon Wen, Hou, Jie, Hung, Li-Wei, Igaev, Maxim, Joseph, Agnel P., Kihara, Daisuke, Kumar, Dilip, Mittal, Sumit, Monastyrskyy, Bohdan, Olek, Mateusz, Palmer, Colin M., Patwardhan, Ardan, Perez, Alberto, Pfab, Jonas, Pintilie, Grigore D., Richardson, Jane S., Rosenthal, Peter B., Sarkar, Daipayan, Schäfer, Luisa U., Schmid, Michael F., Schröder, Gunnar F., Shekhar, Mrinal, Si, Dong, Singharoy, Abishek, Terashi, Genki, Terwilliger, Thomas C., Vaiana, Andrea, Wang, Liguo, Wang, Zhe, Wankowicz, Stephanie A., Williams, Christopher J., Winn, Martyn, Wu, Tianqi, Yu, Xiaodi, Zhang, Kaiming, Berman, Helen M., Chiu, Wah

“…This paper describes outcomes of the 2019 Cryo-EM Model Challenge. The goals were to (1) assess the quality of models that can be produced from cryogenic…”
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Compression of trajectory data: a comprehensive evaluation and new approach by Muckell, Jonathan, Olsen, Paul W., Hwang, Jeong-Hyon, Lawson, Catherine T., Ravi, S. S.

“…GPS-equipped mobile devices such as smart phones and in-car navigation units are collecting enormous amounts of spatial and temporal information that traces a…”
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PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology by Westbrook, John D., Young, Jasmine Y., Shao, Chenghua, Feng, Zukang, Guranovic, Vladimir, Lawson, Catherine L., Vallat, Brinda, Adams, Paul D., Berrisford, John M, Bricogne, Gerard, Diederichs, Kay, Joosten, Robbie P., Keller, Peter, Moriarty, Nigel W., Sobolev, Oleg V., Velankar, Sameer, Vonrhein, Clemens, Waterman, David G., Kurisu, Genji, Berman, Helen M., Burley, Stephen K., Peisach, Ezra

“…[Display omitted] •Community Driven Data Representation for structural biology data.•Provides common data representation and tools that accelerates scientific…”
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Children's active commuting to school: current knowledge and future directions by Davison, Kirsten K, Werder, Jessica L, Lawson, Catherine T

“…Driven largely by international declines in rates of walking and bicycling to school and the noted health benefits of physical activity for children, research…”
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RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D by Burley, Stephen K., Bhikadiya, Charmi, Bi, Chunxiao, Bittrich, Sebastian, Chao, Henry, Chen, Li, Craig, Paul A., Crichlow, Gregg V., Dalenberg, Kenneth, Duarte, Jose M., Dutta, Shuchismita, Fayazi, Maryam, Feng, Zukang, Flatt, Justin W., Ganesan, Sai J., Ghosh, Sutapa, Goodsell, David S., Green, Rachel Kramer, Guranovic, Vladimir, Henry, Jeremy, Hudson, Brian P., Khokhriakov, Igor, Lawson, Catherine L., Liang, Yuhe, Lowe, Robert, Peisach, Ezra, Persikova, Irina, Piehl, Dennis W., Rose, Yana, Sali, Andrej, Segura, Joan, Sekharan, Monica, Shao, Chenghua, Vallat, Brinda, Voigt, Maria, Webb, Benjamin, Westbrook, John D., Whetstone, Shamara, Young, Jasmine Y., Zalevsky, Arthur, Zardecki, Christine

“…Now in its 52nd year of continuous operations, the Protein Data Bank (PDB) is the premiere open‐access global archive housing three‐dimensional (3D)…”
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