Search Results - "Castorina, Leonardo V."

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    PDBench: evaluating computational methods for protein-sequence design by Castorina, Leonardo V, Petrenas, Rokas, Subr, Kartic, Wood, Christopher W

    Published in Bioinformatics (Oxford, England) (01-01-2023)
    “…Abstract Summary Ever increasing amounts of protein structure data, combined with advances in machine learning, have led to the rapid proliferation of methods…”
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    Journal Article
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    Attentive Variational Information Bottleneck for TCR–peptide interaction prediction by Grazioli, Filippo, Machart, Pierre, Mösch, Anja, Li, Kai, Castorina, Leonardo V, Pfeifer, Nico, Min, Martin Renqiang

    Published in Bioinformatics (Oxford, England) (01-01-2023)
    “…Abstract Motivation We present a multi-sequence generalization of Variational Information Bottleneck and call the resulting model Attentive Variational…”
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    Journal Article
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    TIMED-Design: flexible and accessible protein sequence design with convolutional neural networks by Castorina, Leonardo V, Ünal, Suleyman Mert, Subr, Kartic, Wood, Christopher W

    Published in Protein engineering, design and selection (29-01-2024)
    “…Abstract Sequence design is a crucial step in the process of designing or engineering proteins. Traditionally, physics-based methods have been used to solve…”
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    PDBench: Evaluating Computational Methods for Protein Sequence Design by Castorina, Leonardo V, Petrenas, Rokas, Subr, Kartic, Wood, Christopher W

    Published 16-09-2021
    “…Proteins perform critical processes in all living systems: converting solar energy into chemical energy, replicating DNA, as the basis of highly performant…”
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    Journal Article