Search Results - "Cassidy, Kevin C."

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  1. 1
    ProteinVR: Web-based molecular visualization in virtual reality

    ProteinVR: Web-based molecular visualization in virtual reality by Cassidy, Kevin C, Šefčík, Jan, Raghav, Yogindra, Chang, Alexander, Durrant, Jacob D

    Published in PLoS computational biology (01-03-2020)
    “…Protein structure determines biological function. Accurately conceptualizing 3D protein/ligand structures is thus vital to scientific research and education…”
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  2. 2
    Comparative analysis of the LARP1 C-terminal DM15 region through Coelomate evolution

    Comparative analysis of the LARP1 C-terminal DM15 region through Coelomate evolution by Nguyen, Elaine, Sosa, Jahree A, Cassidy, Kevin C, Berman, Andrea J

    Published in PloS one (27-08-2024)
    “…TOR (target of rapamycin), a ubiquitous protein kinase central to cellular homeostasis maintenance, fundamentally regulates ribosome biogenesis in part by its…”
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  3. 3
    Capturing the Mechanism Underlying TOP mRNA Binding to LARP1

    Capturing the Mechanism Underlying TOP mRNA Binding to LARP1 by Cassidy, Kevin C., Lahr, Roni M., Kaminsky, Jesse C., Mack, Stephanie, Fonseca, Bruno D., Das, Subha R., Berman, Andrea J., Durrant, Jacob D.

    Published in Structure (London) (03-12-2019)
    “…The RNA-binding protein La-related protein 1 (LARP1) plays a central role in ribosome biosynthesis. Its C-terminal DM15 region binds the 7-methylguanosine…”
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  4. 4
    Webina: an open-source library and web app that runs AutoDock Vina entirely in the web browser

    Webina: an open-source library and web app that runs AutoDock Vina entirely in the web browser by Kochnev, Yuri, Hellemann, Erich, Cassidy, Kevin C, Durrant, Jacob D

    Published in Bioinformatics (15-08-2020)
    “…Abstract Motivation Molecular docking is a computational technique for predicting how a small molecule might bind a macromolecular target. Among docking…”
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  5. 5
    Secondary-Structure Changes Impact LARP1/mRNA Binding: Simulations and Experiments Suggest New Avenues for Anti-Cancer Drug Discovery

    Secondary-Structure Changes Impact LARP1/mRNA Binding: Simulations and Experiments Suggest New Avenues for Anti-Cancer Drug Discovery by Cassidy, Kevin C., Kaminsky, Jesse C., Berman, Andrea J., Durrant, Jacob D.

    Published in Biophysical journal (07-02-2020)
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  6. 6
    Capturing the Mechanism Underlying Top-Binding to the LARP1 DM15 Region

    Capturing the Mechanism Underlying Top-Binding to the LARP1 DM15 Region by Cassidy, Kevin C., Lahr, Roni M., Kaminsky, Jesse C., Berman, Andrea J., Durrant, Jacob D.

    Published in Biophysical journal (15-02-2019)
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  7. 7
    Capturing the Mechanism Underlying TOP mRNA Binding to LARP1

    Capturing the Mechanism Underlying TOP mRNA Binding to LARP1 by Cassidy, Kevin C., Lahr, Roni M., Kaminsky, Jesse C., Mack, Stephanie, Fonseca, Bruno D., Das, Subha R., Berman, Andrea J., Durrant, Jacob D.

    Published in Structure (London) (01-12-2019)
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  8. 8
    Investigating the Dynamics of LARP1 DM15: A Stalwart of Ribosome Biogenesis Regulation

    Investigating the Dynamics of LARP1 DM15: A Stalwart of Ribosome Biogenesis Regulation by Cassidy, Kevin C

    Published 01-01-2021
    “…Eukaryotic cells regulate the synthesis of proteins based on environmental conditions such as nutrient abundance or stress. Ribosome biogenesis is a key node…”
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