Search Results - "Casey, J R"

Phylogenetically and catabolically diverse diazotrophs reside in deep-sea cold seep sediments by Dong, Xiyang, Zhang, Chuwen, Peng, Yongyi, Zhang, Hong-Xi, Shi, Ling-Dong, Wei, Guangshan, Hubert, Casey R. J., Wang, Yong, Greening, Chris

“…Microbially mediated nitrogen cycling in carbon-dominated cold seep environments remains poorly understood. So far anaerobic methanotrophic archaea (ANME-2)…”
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Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments by Dong, Xiyang, Greening, Chris, Rattray, Jayne E., Chakraborty, Anirban, Chuvochina, Maria, Mayumi, Daisuke, Dolfing, Jan, Li, Carmen, Brooks, James M., Bernard, Bernie B., Groves, Ryan A., Lewis, Ian A., Hubert, Casey R. J.

“…The lack of microbial genomes and isolates from the deep seabed means that very little is known about the ecology of this vast habitat. Here, we investigate…”
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Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity by Li, Zexin, Pan, Donald, Wei, Guangshan, Pi, Weiling, Zhang, Chuwen, Wang, Jiang-Hai, Peng, Yongyi, Zhang, Lu, Wang, Yong, Hubert, Casey R. J., Dong, Xiyang

“…In marine ecosystems, viruses exert control on the composition and metabolism of microbial communities, influencing overall biogeochemical cycling. Deep sea…”
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Diesel and Crude Oil Biodegradation by Cold-Adapted Microbial Communities in the Labrador Sea by Murphy, Sean M C, Bautista, María A, Cramm, Margaret A, Hubert, Casey R J

“…Oil spills in the subarctic marine environment off the coast of Labrador, Canada, are increasingly likely due to potential oil production and increases in ship…”
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Thermogenic hydrocarbon biodegradation by diverse depth-stratified microbial populations at a Scotian Basin cold seep by Dong, Xiyang, Rattray, Jayne E., Campbell, D. Calvin, Webb, Jamie, Chakraborty, Anirban, Adebayo, Oyeboade, Matthews, Stuart, Li, Carmen, Fowler, Martin, Morrison, Natasha M., MacDonald, Adam, Groves, Ryan A., Lewis, Ian A., Wang, Scott H., Mayumi, Daisuke, Greening, Chris, Hubert, Casey R. J.

“…At marine cold seeps, gaseous and liquid hydrocarbons migrate from deep subsurface origins to the sediment-water interface. Cold seep sediments are known to…”
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Evolutionary ecology of microbial populations inhabiting deep sea sediments associated with cold seeps by Dong, Xiyang, Peng, Yongyi, Wang, Muhua, Woods, Laura, Wu, Wenxue, Wang, Yong, Xiao, Xi, Li, Jiwei, Jia, Kuntong, Greening, Chris, Shao, Zongze, Hubert, Casey R. J.

“…Deep sea cold seep sediments host abundant and diverse microbial populations that significantly influence biogeochemical cycles. While numerous studies have…”
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Viruses in deep-sea cold seep sediments harbor diverse survival mechanisms and remain genetically conserved within species by Peng, Yongyi, Lu, Zijian, Pan, Donald, Shi, Ling-Dong, Zhao, Zhao, Liu, Qing, Zhang, Chuwen, Jia, Kuntong, Li, Jiwei, Hubert, Casey R. J., Dong, Xiyang

“…Deep sea cold seep sediments have been discovered to harbor novel, abundant, and diverse bacterial and archaeal viruses. However, little is known about viral…”
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Hydrocarbon seepage in the deep seabed links subsurface and seafloor biospheres by Chakraborty, Anirban, Ruff, S. Emil, Dong, Xiyang, Ellefson, Emily D., Li, Carmen, Brooks, James M., McBee, Jayme, Bernard, Bernie B., Hubert, Casey R. J.

“…Marine cold seeps transmit fluids between the subseafloor and seafloor biospheres through upward migration of hydrocarbons that originate in deep sediment…”
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Using Thermodynamics to Predict the Outcomes of Nitrate-Based Oil Reservoir Souring Control Interventions by Dolfing, Jan, Hubert, Casey R J

“…Souring is the undesirable production of hydrogen sulfide (H S) in oil reservoirs by sulfate-reducing bacteria (SRB). Souring is a common problem during…”
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The Critical Role of Environmental Synergies in the Creation of Bionanohybrid Microbes by Barnes, Robert J, Voegtlin, Stephen P, Hubert, Casey R J, Larter, Stephen R, Bryant, Steven L

“…A wide range of bacteria can synthesize surface-associated nanoparticles (SANs) through exogenous metal ions reacting with sulfide produced via cysteine…”
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Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents by Müller, Albert Leopold, de Rezende, Júlia Rosa, Hubert, Casey R J, Kjeldsen, Kasper Urup, Lagkouvardos, Ilias, Berry, David, Jørgensen, Bo Barker, Loy, Alexander

“…Microbial biogeography is influenced by the combined effects of passive dispersal and environmental selection, but the contribution of either factor can be…”
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Environmental Selection and Biogeography Shape the Microbiome of Subsurface Petroleum Reservoirs by Gittins, Daniel A, Bhatnagar, Srijak, Hubert, Casey R J

“…Petroleum reservoirs within the deep biosphere are extreme environments inhabited by diverse microbial communities and represent biogeochemical hot spots in…”
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CANT-HYD: A Curated Database of Phylogeny-Derived Hidden Markov Models for Annotation of Marker Genes Involved in Hydrocarbon Degradation by Khot, Varada, Zorz, Jackie, Gittins, Daniel A, Chakraborty, Anirban, Bell, Emma, Bautista, María A, Paquette, Alexandre J, Hawley, Alyse K, Novotnik, Breda, Hubert, Casey R J, Strous, Marc, Bhatnagar, Srijak

“…Many pathways for hydrocarbon degradation have been discovered, yet there are no dedicated tools to identify and predict the hydrocarbon degradation potential…”
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Massive dominance of Epsilonproteobacteria in formation waters from a Canadian oil sands reservoir containing severely biodegraded oil by Hubert, Casey R. J., Oldenburg, Thomas B. P., Fustic, Milovan, Gray, Neil D., Larter, Stephen R., Penn, Kevin, Rowan, Arlene K., Seshadri, Rekha, Sherry, Angela, Swainsbury, Richard, Voordouw, Gerrit, Voordouw, Johanna K., Head, Ian M.

“…Summary The subsurface microbiology of an Athabasca oil sands reservoir in western Canada containing severely biodegraded oil was investigated by combining 16S…”
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Comparison of sulfide‐oxidizing Sulfurimonas strains reveals a new mode of thiosulfate formation in subsurface environments by Lahme, Sven, Callbeck, Cameron M., Eland, Lucy E., Wipat, Anil, Enning, Dennis, Head, Ian M., Hubert, Casey R.J.

“…Summary Sulfur‐oxidizing Sulfurimonas spp. are widespread in sediments, hydrothermal vent fields, aquifers and subsurface environments such as oil reservoirs…”
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Activity and community structures of sulfate-reducing microorganisms in polar, temperate and tropical marine sediments by Robador, Alberto, Müller, Albert L, Sawicka, Joanna E, Berry, David, Hubert, Casey R J, Loy, Alexander, Jørgensen, Bo Barker, Brüchert, Volker

“…Temperature has a fundamental impact on the metabolic rates of microorganisms and strongly influences microbial ecology and biogeochemical cycling in the…”
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"Freezing" Thermophiles: From One Temperature Extreme to Another by Milojevic, Tetyana, Cramm, Margaret Anne, Hubert, Casey R J, Westall, Frances

“…New detections of thermophiles in psychrobiotic (i.e., bearing cold-tolerant life forms) marine and terrestrial habitats including Arctic marine sediments,…”
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SituSeq: an offline protocol for rapid and remote Nanopore 16S rRNA amplicon sequence analysis by Zorz, Jackie, Li, Carmen, Chakraborty, Anirban, Gittins, Daniel A, Surcon, Taylor, Morrison, Natasha, Bennett, Robbie, MacDonald, Adam, Hubert, Casey R J

“…Microbiome analysis through 16S rRNA gene sequencing is a crucial tool for understanding the microbial ecology of any habitat or ecosystem. However, workflows…”
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Quantitative Evaluation of Municipal Wastewater Disinfection by 280 nm UVC LED by Yu, Linlong, Acosta, Nicole, Bautista, Maria A, McCalder, Janine, Himann, Jode, Pogosian, Samuel, Hubert, Casey R. J, Parkins, Michael D, Achari, Gopal

“…UV-LED irradiation has attracted attention in water and wastewater disinfection applications. However, no studies have quantitatively investigated the impact…”
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Metabolic responses of thermophilic endospores to sudden heat-induced perturbation in marine sediment samples by Chakraborty, Anirban, Rattray, Jayne E., Drake, Sienna S., Matthews, Stuart, Li, Carmen, Jørgensen, Bo Barker, Hubert, Casey R. J.

“…Microbially mediated processes in a given habitat tend to be catalyzed by abundant populations that are ecologically adapted to exploit specific environmental…”
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