Search Results - "Carulla, Mateo Rojas"

Getting personal with epigenetics: towards individual-specific epigenomic imputation with machine learning by Hawkins-Hooker, Alex, Visonà, Giovanni, Narendra, Tanmayee, Rojas-Carulla, Mateo, Schölkopf, Bernhard, Schweikert, Gabriele

“…Epigenetic modifications are dynamic mechanisms involved in the regulation of gene expression. Unlike the DNA sequence, epigenetic patterns vary not only…”
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The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles by Schreiber, Jacob, Boix, Carles, Wook Lee, Jin, Li, Hongyang, Guan, Yuanfang, Chang, Chun-Chieh, Chang, Jen-Chien, Hawkins-Hooker, Alex, Schölkopf, Bernhard, Schweikert, Gabriele, Carulla, Mateo Rojas, Canakoglu, Arif, Guzzo, Francesco, Nanni, Luca, Masseroli, Marco, Carman, Mark James, Pinoli, Pietro, Hong, Chenyang, Yip, Kevin Y, Spence, Jeffrey P, Batra, Sanjit Singh, Song, Yun S, Mahony, Shaun, Zhang, Zheng, Tan, Wuwei, Shen, Yang, Sun, Yuanfei, Shi, Minyi, Adrian, Jessika, Sandstrom, Richard, Farrell, Nina, Halow, Jessica, Lee, Kristen, Jiang, Lixia, Yang, Xinqiong, Epstein, Charles, Strattan, J Seth, Bernstein, Bradley, Snyder, Michael, Kellis, Manolis, Stafford, William, Kundaje, Anshul

“…A promising alternative to comprehensively performing genomics experiments is to, instead, perform a subset of experiments and use computational methods to…”
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DeepMAsED: evaluating the quality of metagenomic assemblies by Mineeva, Olga, Rojas-Carulla, Mateo, Ley, Ruth E, Schölkopf, Bernhard, Youngblut, Nicholas D

“…Abstract Motivation Methodological advances in metagenome assembly are rapidly increasing in the number of published metagenome assemblies. However,…”
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Recommendations on compiling test datasets for evaluating artificial intelligence solutions in pathology by Homeyer, André, Geißler, Christian, Schwen, Lars Ole, Zakrzewski, Falk, Evans, Theodore, Strohmenger, Klaus, Westphal, Max, Bülow, Roman David, Kargl, Michaela, Karjauv, Aray, Munné-Bertran, Isidre, Retzlaff, Carl Orge, Romero-López, Adrià, Sołtysiński, Tomasz, Plass, Markus, Carvalho, Rita, Steinbach, Peter, Lan, Yu-Chia, Bouteldja, Nassim, Haber, David, Rojas-Carulla, Mateo, Vafaei Sadr, Alireza, Kraft, Matthias, Krüger, Daniel, Fick, Rutger, Lang, Tobias, Boor, Peter, Müller, Heimo, Hufnagl, Peter, Zerbe, Norman

“…Artificial intelligence (AI) solutions that automatically extract information from digital histology images have shown great promise for improving pathological…”
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Publisher Correction to: Recommendations on compiling test datasets for evaluating artificial intelligence solutions in pathology by Homeyer, André, Geißler, Christian, Schwen, Lars Ole, Zakrzewski, Falk, Evans, Theodore, Strohmenger, Klaus, Westphal, Max, Bülow, Roman David, Kargl, Michaela, Karjauv, Aray, Munné-Bertran, Isidre, Retzlaff, Carl Orge, Romero-López, Adrià, Sołtysiński, Tomasz, Plass, Markus, Carvalho, Rita, Steinbach, Peter, Lan, Yu-Chia, Bouteldja, Nassim, Haber, David, Rojas-Carulla, Mateo, Vafaei Sadr, Alireza, Kraft, Matthias, Krüger, Daniel, Fick, Rutger, Lang, Tobias, Boor, Peter, Müller, Heimo, Hufnagl, Peter, Zerbe, Norman

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Learning Independent Causal Mechanisms by Parascandolo, Giambattista, Kilbertus, Niki, Rojas-Carulla, Mateo, Schölkopf, Bernhard

“…Proceedings of the 35th International Conference on Machine Learning, PMLR 80:4036-4044, 2018 Statistical learning relies upon data sampled from a…”
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GeNet: Deep Representations for Metagenomics by Rojas-Carulla, Mateo, Tolstikhin, Ilya, Luque, Guillermo, Youngblut, Nicholas, Ley, Ruth, Schölkopf, Bernhard

“…We introduce GeNet, a method for shotgun metagenomic classification from raw DNA sequences that exploits the known hierarchical structure between labels for…”
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Causal Discovery Using Proxy Variables by Rojas-Carulla, Mateo, Baroni, Marco, Lopez-Paz, David

“…Discovering causal relations is fundamental to reasoning and intelligence. In particular, observational causal discovery algorithms estimate the cause-effect…”
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Recommendations on test datasets for evaluating AI solutions in pathology by Homeyer, André, Geißler, Christian, Schwen, Lars Ole, Zakrzewski, Falk, Evans, Theodore, Strohmenger, Klaus, Westphal, Max, Bülow, Roman David, Kargl, Michaela, Karjauv, Aray, Munné-Bertran, Isidre, Retzlaff, Carl Orge, Romero-López, Adrià, Sołtysiński, Tomasz, Plass, Markus, Carvalho, Rita, Steinbach, Peter, Lan, Yu-Chia, Bouteldja, Nassim, Haber, David, Rojas-Carulla, Mateo, Sadr, Alireza Vafaei, Kraft, Matthias, Krüger, Daniel, Fick, Rutger, Lang, Tobias, Boor, Peter, Müller, Heimo, Hufnagl, Peter, Zerbe, Norman

“…Mod Pathol (2022) Artificial intelligence (AI) solutions that automatically extract information from digital histology images have shown great promise for…”
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Avoiding Discrimination through Causal Reasoning by Kilbertus, Niki, Rojas-Carulla, Mateo, Parascandolo, Giambattista, Hardt, Moritz, Janzing, Dominik, Schölkopf, Bernhard

“…Advances in Neural Information Processing Systems 30, 2017, p. 656--666 Recent work on fairness in machine learning has focused on various statistical…”
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Discriminative k-shot learning using probabilistic models by Bauer, Matthias, Rojas-Carulla, Mateo, Świątkowski, Jakub Bartłomiej, Schölkopf, Bernhard, Turner, Richard E

“…This paper introduces a probabilistic framework for k-shot image classification. The goal is to generalise from an initial large-scale classification task to a…”
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Invariant Models for Causal Transfer Learning by Rojas-Carulla, Mateo, Schölkopf, Bernhard, Turner, Richard, Peters, Jonas

“…Journal of Machine Learning Research. 19 (2018) Methods of transfer learning try to combine knowledge from several related tasks (or domains) to improve…”
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