Search Results - "Carreras, Joan"

Human cytomegalovirus genomics and transcriptomics through the lens of next-generation sequencing: revision and future challenges by Martí-Carreras, Joan, Maes, Piet

“…The human cytomegalovirus (HCMV) genome was sequenced by hierarchical shotgun almost 30 years ago. Over these years, low and high passaged strains have been…”
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Real‐time genomics for One Health by Urban, Lara, Perlas, Albert, Francino, Olga, Martí‐Carreras, Joan, Muga, Brenda A, Mwangi, Jenniffer W, Boykin Okalebo, Laura, Stanton, Jo‐Ann L, Black, Amanda, Waipara, Nick, Fontsere, Claudia, Eccles, David, Urel, Harika, Reska, Tim, Morales, Hernán E, Palmada‐Flores, Marc, Marques‐Bonet, Tomas, Watsa, Mrinalini, Libke, Zane, Erkenswick, Gideon, van Oosterhout, Cock

“…The ongoing degradation of natural systems and other environmental changes has put our society at a crossroad with respect to our future relationship with our…”
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Microorganisms Involved in Methylmercury Demethylation and Mercury Reduction are Widely Distributed and Active in the Bathypelagic Deep Ocean Waters by Sanz-Sáez, Isabel, Bravo, Andrea G., Ferri, Marta, Carreras, Joan-Martí, Sánchez, Olga, Sebastian, Marta, Ruiz-González, Clara, Capo, Eric, Duarte, Carlos M., Gasol, Josep M., Sánchez, Pablo, Acinas, Silvia G.

“…The ocean’s mercury (Hg) content has tripled due to anthropogenic activities, and although the dark ocean (>200 m) has become an important Hg reservoir,…”
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A Phylodynamic Workflow to Rapidly Gain Insights into the Dispersal History and Dynamics of SARS-CoV-2 Lineages by Dellicour, Simon, Durkin, Keith, Hong, Samuel L, Vanmechelen, Bert, Martí-Carreras, Joan, Gill, Mandev S, Meex, Cécile, Bontems, Sébastien, André, Emmanuel, Gilbert, Marius, Walker, Conor, Maio, Nicola De, Faria, Nuno R, Hadfield, James, Hayette, Marie-Pierre, Bours, Vincent, Wawina-Bokalanga, Tony, Artesi, Maria, Baele, Guy, Maes, Piet

“…Abstract Since the start of the COVID-19 pandemic, an unprecedented number of genomic sequences of SARS-CoV-2 have been generated and shared with the…”
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Investigation on colorectal cancer and human herpesvirus infection among Algerian patients by Bouchemal, Amina, Martí Carreras, Joan, Khireddine, Lydia, Bouchemal, Ahmed Amir, Nasri, Fares, Maes, Piet, Ghidouche, Abderrezak, Bedjou, Fatiha

“…Herpesviruses are a widespread family of double-stranded DNA viruses that establish life-long persistent infection in their hosts. Cumulative evidence tends to…”
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Preparedness needs research: How fundamental science and international collaboration accelerated the response to COVID-19 by Kinsella, Cormac M, Santos, Pauline Dianne, Postigo-Hidalgo, Ignacio, Folgueiras-González, Alba, Passchier, Tim Casper, Szillat, Kevin P, Akello, Joyce Odeke, Álvarez-Rodríguez, Beatriz, Martí-Carreras, Joan

“…The first cluster of patients suffering from coronavirus disease 2019 (COVID-19) was identified on December 21, 2019, and as of July 29, 2020, severe acute…”
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Are terminology planning evaluation and language policy and planning evaluation applicable to the evaluation of standardisation? by Costa Carreras, Joan

“…This initial work on evaluating standardisation tries to explore to what extent standardisation can be evaluated in the same way as terminology planning and…”
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Polyomavirus BK Genome Comparison Shows High Genetic Diversity in Kidney Transplant Recipients Three Months after Transplantation by Mineeva-Sangwo, Olga, Martí-Carreras, Joan, Cleenders, Evert, Kuypers, Dirk, Maes, Piet, Andrei, Graciela, Naesens, Maarten, Snoeck, Robert

“…BK polyomavirus (BKPyV) is a human DNA virus generally divided into twelve subgroups based on the genetic diversity of Viral Protein 1 (VP1). BKPyV can cause…”
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Exploiting genomic surveillance to map the spatio-temporal dispersal of SARS-CoV-2 spike mutations in Belgium across 2020 by Bollen, Nena, Artesi, Maria, Durkin, Keith, Hong, Samuel L., Potter, Barney, Boujemla, Bouchra, Vanmechelen, Bert, Martí-Carreras, Joan, Wawina-Bokalanga, Tony, Meex, Cécile, Bontems, Sébastien, Hayette, Marie-Pierre, André, Emmanuel, Maes, Piet, Bours, Vincent, Baele, Guy, Dellicour, Simon

“…At the end of 2020, several new variants of SARS-CoV-2—designated variants of concern—were detected and quickly suspected to be associated with a higher…”
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BKTyper: Free Online Tool for Polyoma BK Virus VP1 and NCCR Typing by Martí-Carreras, Joan, Mineeva-Sangwo, Olga, Topalis, Dimitrios, Snoeck, Robert, Andrei, Graciela, Maes, Piet

“…Human BK polyomavirus (BKPyV) prevalence has been increasing due to the introduction of more potent immunosuppressive agents in transplant recipients, and its…”
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Human Diversity of Killer Cell Immunoglobulin-Like Receptors and Human Leukocyte Antigen Class I Alleles and Ebola Virus Disease Outcomes by Wawina-Bokalanga, Tony, Vanmechelen, Bert, Lhermitte, Valentine, Martí-Carreras, Joan, Vergote, Valentijn, Koundouno, Fara Raymond, Akoi-Boré, Joseph, Thom, Ruth, Tipton, Tom, Steeds, Kimberley, Moussa, Kéita Balla, Amento, Ablam, Laenen, Lies, Duraffour, Sophie, Gabriel, Martin, Ruibal, Paula, Hall, Yper, Kader-Kondé, Mandy, Günther, Stephan, Baele, Guy, Muñoz-Fontela, Cesar, Van Weyenbergh, Johan, Carroll, Miles W, Maes, Piet

“…We investigated the genetic profiles of killer cell immunoglobulin-like receptors (KIRs) in Ebola virus-infected patients. We studied the relationship between…”
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Bat echolocation plasticity in allopatry: a call for caution in acoustic identification of Pipistrellus sp by Montauban, Cecilia, Mas, Maria, Tuneu-Corral, Carme, Wangensteen, Owen S., Budinski, Ivana, Martí-Carreras, Joan, Flaquer, Carles, Puig-Montserrat, Xavier, López-Baucells, Adrià

“…Animals modify their behaviours and interactions in response to changing environments. In bats, environmental adaptations are reflected in echolocation…”
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Accounting for population structure reveals ambiguity in the Zaire Ebolavirus reservoir dynamics by Vrancken, Bram, Wawina-Bokalanga, Tony, Vanmechelen, Bert, Martí-Carreras, Joan, Carroll, Miles W, Nsio, Justus, Kapetshi, Jimmy, Makiala-Mandanda, Sheila, Muyembe-Tamfum, Jean-Jacques, Baele, Guy, Vermeire, Kurt, Vergote, Valentijn, Ahuka-Mundeke, Steve, Maes, Piet

“…Ebolaviruses pose a substantial threat to wildlife populations and to public health in Africa. Evolutionary analyses of virus genome sequences can contribute…”
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Exploration of the Ixodes ricinus virosphere unveils an extensive virus diversity including novel coltiviruses and other reoviruses by Vanmechelen, Bert, Merino, Michelle, Vergote, Valentijn, Laenen, Lies, Thijssen, Marijn, Martí-Carreras, Joan, Claerebout, Edwin, Maes, Piet

“…Abstract Recent metagenomics studies have revealed several tick species to host a variety of previously undiscovered RNA viruses. Ixodes ricinus, which is…”
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Identification of Leishmania infantum Epidemiology, Drug Resistance and Pathogenicity Biomarkers with Nanopore Sequencing by Martí-Carreras, Joan, Carrasco, Marina, Gómez-Ponce, Marcel, Noguera-Julián, Marc, Fisa, Roser, Riera, Cristina, Alcover, Maria Magdalena, Roura, Xavier, Ferrer, Lluís, Francino, Olga

“…The emergence of drug-resistant strains of the parasite Leishmania infantum infecting dogs and humans represents an increasing threat. L. infantum genomes are…”
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Second capture of Promops centralis (Chiroptera) in French Guiana after 28 years of mist-netting and description of its echolocation and distress calls by FROIDEVAUX, Jérémy S.P., ROEMER, Charlotte, LEMARCHAND, Clément, MARTÍ-CARRERAS, Joan, MAES, Piet, RUFRAY, Vincent, URIOT, Quentin, URIOT, Sylvain, LÓPEZ-BAUCELLS, Adrià

“…ABSTRACT The Amazonian basin harbours some of the most bat-diverse ecosystems worldwide. Yet, information on elusive, high-flying bat species such as…”
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Identification of the First SARS-CoV-2 Lineage B.1.1.529 Virus Detected in Europe by Vanmechelen, Bert, Logist, Anne-Sophie, Wawina-Bokalanga, Tony, Verlinden, Jens, Martí-Carreras, Joan, Geenen, Caspar, Slechten, Bram, Cuypers, Lize, André, Emmanuel, Baele, Guy, Maes, Piet

“…We report the complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron variant (lineage B.1.1.529) from a Belgian…”
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Drosophila Interspecific Hybridization Causes A Deregulation of the piRNA Pathway Genes by Gámez-Visairas, Víctor, Romero-Soriano, Valèria, Martí-Carreras, Joan, Segarra-Carrillo, Eila, García Guerreiro, Maria Pilar

“…Almost all eukaryotes have transposable elements (TEs) against which they have developed defense mechanisms. In the Drosophila germline, the main transposable…”
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Complete Genome Sequence of a New Ebola Virus Strain Isolated during the 2017 Likati Outbreak in the Democratic Republic of the Congo by Wawina-Bokalanga, Tony, Vanmechelen, Bert, Martí-Carreras, Joan, Vergote, Valentijn, Vermeire, Kurt, Muyembe-Tamfum, Jean-Jacques, Ahuka-Mundeke, Steve, Maes, Piet

“…Genomic sequencing for early identification of Ebola virus remains a big challenge in low-income countries. Here, we report the complete genome sequence of an…”
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NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements by Connor, Ryan, Brister, Rodney, Buchmann, Jan P, Deboutte, Ward, Edwards, Rob, Martí-Carreras, Joan, Tisza, Mike, Zalunin, Vadim, Andrade-Martínez, Juan, Cantu, Adrian, D'Amour, Michael, Efremov, Alexandre, Fleischmann, Lydia, Forero-Junco, Laura, Garmaeva, Sanzhima, Giluso, Melissa, Glickman, Cody, Henderson, Margaret, Kellman, Benjamin, Kristensen, David, Leubsdorf, Carl, Levi, Kyle, Levi, Shane, Pakala, Suman, Peddu, Vikas, Ponsero, Alise, Ribeiro, Eldred, Roy, Farrah, Rutter, Lindsay, Saha, Surya, Shakya, Migun, Shean, Ryan, Miller, Matthew, Tully, Benjamin, Turkington, Christopher, Youens-Clark, Ken, Vanmechelen, Bert, Busby, Ben

“…A wealth of viral data sits untapped in publicly available metagenomic data sets when it might be extracted to create a usable index for the virological…”
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