Search Results - "Cabau, Cédric"

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database by Pasquier, Jeremy, Cabau, Cédric, Nguyen, Thaovi, Jouanno, Elodie, Severac, Dany, Braasch, Ingo, Journot, Laurent, Pontarotti, Pierre, Klopp, Christophe, Postlethwait, John H, Guiguen, Yann, Bobe, Julien

“…With more than 30,000 species, ray-finned fish represent approximately half of vertebrates. The evolution of ray-finned fish was impacted by several whole…”
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Synteny-Guided Resolution of Gene Trees Clarifies the Functional Impact of Whole-Genome Duplications by Parey, Elise, Louis, Alexandra, Cabau, Cédric, Guiguen, Yann, Roest Crollius, Hugues, Berthelot, Camille

“…Abstract Whole-genome duplications (WGDs) have major impacts on the evolution of species, as they produce new gene copies contributing substantially to…”
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An Immune-Related Gene Evolved into the Master Sex-Determining Gene in Rainbow Trout, Oncorhynchus mykiss by Yano, Ayaka, Guyomard, René, Nicol, Barbara, Jouanno, Elodie, Quillet, Edwige, Klopp, Christophe, Cabau, Cédric, Bouchez, Olivier, Fostier, Alexis, Guiguen, Yann

“…Since the discovery of Sry in mammals [1, 2], few other master sex-determining genes have been identified in vertebrates [3–7]. To date, all of these genes…”
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The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates by Berthelot, Camille, Brunet, Frédéric, Chalopin, Domitille, Juanchich, Amélie, Bernard, Maria, Noël, Benjamin, Bento, Pascal, Da Silva, Corinne, Labadie, Karine, Alberti, Adriana, Aury, Jean-Marc, Louis, Alexandra, Dehais, Patrice, Bardou, Philippe, Montfort, Jérôme, Klopp, Christophe, Cabau, Cédric, Gaspin, Christine, Thorgaard, Gary H., Boussaha, Mekki, Quillet, Edwige, Guyomard, René, Galiana, Delphine, Bobe, Julien, Volff, Jean-Nicolas, Genêt, Carine, Wincker, Patrick, Jaillon, Olivier, Crollius, Hugues Roest, Guiguen, Yann

“…Vertebrate evolution has been shaped by several rounds of whole-genome duplications (WGDs) that are often suggested to be associated with adaptive radiations…”
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Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies by Cabau, Cédric, Escudié, Frédéric, Djari, Anis, Guiguen, Yann, Bobe, Julien, Klopp, Christophe

“…transcriptome assembly of short reads is now a common step in expression analysis of organisms lacking a reference genome sequence. Several software packages…”
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Detection of DNA methylation signatures through the lens of genomic imprinting by Hubert, Jean-Noël, Iannuccelli, Nathalie, Cabau, Cédric, Jacomet, Eva, Billon, Yvon, Serre, Rémy-Félix, Vandecasteele, Céline, Donnadieu, Cécile, Demars, Julie

“…Genomic imprinting represents an original model of epigenetic regulation resulting in a parent-of-origin expression. Despite the critical role of imprinted…”
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Genome structures resolve the early diversification of teleost fishes by Parey, Elise, Louis, Alexandra, Montfort, Jerome, Bouchez, Olivier, Roques, Céline, Iampietro, Carole, Lluch, Jerome, Castinel, Adrien, Donnadieu, Cécile, Desvignes, Thomas, Floi Bucao, Christabel, Jouanno, Elodie, Wen, Ming, Mejri, Sahar, Dirks, Ron, Jansen, Hans, Henkel, Christiaan, Chen, Wei-Jen, Zahm, Margot, Cabau, Cédric, Klopp, Christophe, Thompson, Andrew W, Robinson-Rechavi, Marc, Braasch, Ingo, Lecointre, Guillaume, Bobe, Julien, Postlethwait, John H, Berthelot, Camille, Roest Crollius, Hugues, Guiguen, Yann

“…Accurate species phylogenies are a prerequisite for all evolutionary research. Teleosts are the largest and most diversified group of extant vertebrates, but…”
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Gene expression profiling to identify eggshell proteins involved in physical defense of the chicken egg by Jonchère, Vincent, Réhault-Godbert, Sophie, Hennequet-Antier, Christelle, Cabau, Cédric, Sibut, Vonick, Cogburn, Larry A, Nys, Yves, Gautron, Joel

“…As uricoletic animals, chickens produce cleidoic eggs, which are self-contained bacteria-resistant biological packages for extra-uterine development of the…”
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A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus by Imarazene, Boudjema, Du, Kang, Beille, Séverine, Jouanno, Elodie, Feron, Romain, Pan, Qiaowei, Torres-Paz, Jorge, Lopez-Roques, Céline, Castinel, Adrien, Gil, Lisa, Kuchly, Claire, Donnadieu, Cécile, Parrinello, Hugues, Journot, Laurent, Cabau, Cédric, Zahm, Margot, Klopp, Christophe, Pavlica, Tomáš, Al-Rikabi, Ahmed, Liehr, Thomas, Simanovsky, Sergey A., Bohlen, Joerg, Sember, Alexandr, Perez, Julie, Veyrunes, Frédéric, Mueller, Thomas D., Postlethwait, John H., Schartl, Manfred, Herpin, Amaury, Rétaux, Sylvie, Guiguen, Yann

“…Sex chromosomes are generally derived from a pair of classical type-A chromosomes, and relatively few alternative models have been proposed up to now.1,2 B…”
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Rabbit targeted genomic sequences after heterologous hybridization using human exome by Iannuccelli, Nathalie, Sarry, Julien, Billon, Yvon, Aymard, Patrick, Helies, Virginie, Cabau, Cédric, Donnadieu, Cécile, Demars, Julie

“…Abstract Objective Causal mutations for major genes that underlie a broad range of morphological traits are often located within exons of genes that then…”
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Generation of a chromosome‐level genome assembly for Pacific halibut (Hippoglossus stenolepis) and characterization of its sex‐determining genomic region by Jasonowicz, Andrew J., Simeon, Anna, Zahm, Margot, Cabau, Cédric, Klopp, Christophe, Roques, Céline, Iampietro, Carole, Lluch, Jérôme, Donnadieu, Cécile, Parrinello, Hugues, Drinan, Daniel P., Hauser, Lorenz, Guiguen, Yann, Planas, Josep V.

“…The Pacific halibut (Hippoglossus stenolepis) is a key species in the North Pacific Ocean and Bering Sea ecosystems, where it also supports important…”
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Transcriptome Profiling of the Pacific Oyster Crassostrea gigas Visceral Ganglia over a Reproduction Cycle Identifies Novel Regulatory Peptides by Réalis-Doyelle, Emilie, Schwartz, Julie, Cabau, Cédric, Le Franc, Lorane, Bernay, Benoit, Rivière, Guillaume, Klopp, Christophe, Favrel, Pascal

“…The neuropeptides involved in the regulation of reproduction in the Pacific oyster ( ) are quite diverse. To investigate this diversity, a transcriptomic…”
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Genome Sequence of the Euryhaline Javafish Medaka, Oryzias javanicus : A Small Aquarium Fish Model for Studies on Adaptation to Salinity by Takehana, Yusuke, Zahm, Margot, Cabau, Cédric, Klopp, Christophe, Roques, Céline, Bouchez, Olivier, Donnadieu, Cécile, Barrachina, Celia, Journot, Laurent, Kawaguchi, Mari, Yasumasu, Shigeki, Ansai, Satoshi, Naruse, Kiyoshi, Inoue, Koji, Shinzato, Chuya, Schartl, Manfred, Guiguen, Yann, Herpin, Amaury

“…The genus consists of 35 medaka-fish species each exhibiting various ecological, morphological and physiological peculiarities and adaptations. Beyond of being…”
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Functional genomics of the digestive tract in broilers by Juanchich, Amélie, Hennequet-Antier, Christelle, Cabau, Cédric, Le Bihan-Duval, Elisabeth, Duclos, Michel J, Mignon-Grasteau, Sandrine, Narcy, Agnès

“…The sustainability of poultry farming relies on the development of more efficient and autonomous production systems in terms of feed supply. This implies a…”
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Genome structures resolve the early diversification of teleost fishes by Parey, Elise, Louis, Alexandra, Montfort, Jérôme, Bouchez, Olivier, Roques, Céline, Iampietro, Carole, Lluch, Jerome, Castinel, Adrien, Donnadieu, Cécile, Desvignes, Thomas, Floi Bucao, Christabel, Jouanno, Elodie, Wen, Ming, Mejri, Sahar, Dirks, Ron, Jansen, Hans, Henkel, Christiaan, Chen, Wei-Jen, Zahm, Margot, Cabau, Cédric, Klopp, Christophe, Thompson, Andrew, Robinson-Rechavi, Marc, Braasch, Ingo, Lecointre, Guillaume, Bobe, Julien, Postlethwait, John, Berthelot, Camille, Roest Crollius, Hugues, Guiguen, Yann

“…Accurate species phylogenies are a prerequisite for evolutionary research. Teleosts are by far the largest and the most diversified group of extant…”
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On the specific status of eastern Mediterranean Dendrophyllia corals (Cnidaria, Anthozoa): Genetic characterization and speciation scenarios by Aurelle, Didier, Haguenauer, Anne, Blaise, Chloé, Reynes, Lauric, Arnaud‐Haond, Sophie, Boavida, Joana, Cabau, Cédric, Klopp, Christophe, Lundalv, Tomas, Noûs, Camille, Sartoretto, Stéphane, Wienberg, Claudia, Jiménez, Carlos E., Orejas, Covadonga

“…The deep‐sea corals Dendrophyllia ramea and Dendrophyllia cornigera occur in Mediterranean and Atlantic waters. Both species are found in different…”
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RNAbrowse: RNA-Seq de novo assembly results browser by Mariette, Jérôme, Noirot, Céline, Nabihoudine, Ibounyamine, Bardou, Philippe, Hoede, Claire, Djari, Anis, Cabau, Cédric, Klopp, Christophe

“…Transcriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results,…”
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High-throughput sequencing analyses of XX genital ridges lacking FOXL2 reveal DMRT1 up-regulation before SOX9 expression during the sex-reversal process in goats by Elzaiat, Maëva, Jouneau, Luc, Thépot, Dominique, Klopp, Christophe, Allais-Bonnet, Aurélie, Cabau, Cédric, André, Marjolaine, Chaffaux, Stéphane, Cribiu, Edmond-Paul, Pailhoux, Eric, Pannetier, Maëlle

“…FOXL2 loss of function in goats leads to the early transdifferentiation of ovaries into testes, then to the full sex reversal of XX homozygous mutants. By…”
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Siberian sturgeon multi-tissue reference transcriptome database by Klopp, Christophe, Cabau, Cédric, Greif, Gonzalo, Lasalle, André, Di Landro, Santiago, Vizziano-Cantonnet, Denise

“…Abstract Motivation: Siberian sturgeon is a long lived and late maturing fish farmed for caviar production in 50 countries. Functional genomics enable to find…”
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Multi-tissue Siberian sturgeon RNA sequencing data by Klopp, Christophe, Cabau, Cédric, Lasalle, André, Di Landro, Santiago, Greif, Gonzalo, Vizziano-Cantonnet, Denise

“…Siberian sturgeon, Acipenser baerii, is a commercially valuable fish for flesh and caviar production and a threatened species. We produced transcriptomic data…”
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