Search Results - "Cabarcas, Felipe"

Large genomic deletions delineate Mycobacterium tuberculosis L4 sublineages in South American countries by Baena, Andres, Cabarcas, Felipe, Ocampo, Juan C, Barrera, Luis F, Alzate, Juan F

“…Mycobacterium tuberculosis (Mtb) is still one of the primary pathogens of humans causing tuberculosis (TB) disease. Mtb embraces nine well-defined phylogenetic…”
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Metagenomic Analysis of Biocide-Treated Neotropical Oil Reservoir Water Unveils Microdiversity of Thermophile Tepidiphilus by Bedoya, Katherine, Niño, Jhorman, Acero, Julia, Jaimes-Prada, Ronald, Cabarcas, Felipe, Alzate, Juan F.

“…Microorganisms are capable of colonizing extreme environments like deep biosphere and oil reservoirs. The prokaryotes diversity in exploited oil reservoirs is…”
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Dual RNA Sequencing of Mycobacterium tuberculosis -Infected Human Splenic Macrophages Reveals a Strain-Dependent Host-Pathogen Response to Infection by López-Agudelo, Víctor A, Baena, Andres, Barrera, Vianey, Cabarcas, Felipe, Alzate, Juan F, Beste, Dany J V, Ríos-Estepa, Rigoberto, Barrera, Luis F

“…Tuberculosis (TB) is caused by (Mtb), leading to pulmonary and extrapulmonary TB, whereby Mtb is disseminated to many other organs and tissues. Dissemination…”
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DATMA: Distributed AuTomatic Metagenomic Assembly and annotation framework by Benavides, Andres, Sanchez, Friman, Alzate, Juan F, Cabarcas, Felipe

“…A prime objective in metagenomics is to classify DNA sequence fragments into taxonomic units. It usually requires several stages: read's quality control, de…”
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Cryptosporidium hominis Phylogenomic Analysis Reveals Separate Lineages With Continental Segregation by Cabarcas, Felipe, Galvan-Diaz, Ana Luz, Arias-Agudelo, Laura M., García-Montoya, Gisela María, Daza, Juan M., Alzate, Juan F.

“…Cryptosporidium is a leading cause of waterborne outbreaks globally, and Cryptosporidium hominis and C. parvum are the principal cause of human…”
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Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 family by Baena, Andres, Cabarcas, Felipe, Alvarez-Eraso, Karen L.F., Isaza, Juan Pablo, Alzate, Juan F., Barrera, Luis F.

“…The heterogeneity of the clinical outcome of Mycobacterium tuberculosis (Mtb) infection may be due in part to different strategies used by circulating strains…”
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CLAME: a new alignment-based binning algorithm allows the genomic description of a novel Xanthomonadaceae from the Colombian Andes by Benavides, Andres, Isaza, Juan Pablo, Niño-García, Juan Pablo, Alzate, Juan Fernando, Cabarcas, Felipe

“…Hot spring bacteria have unique biological adaptations to survive the extreme conditions of these environments; these bacteria produce thermostable enzymes…”
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Metagenomic assessment of the microbial community and methanogenic pathways in biosolids from a municipal wastewater treatment plant in Medellín, Colombia by Bedoya, Katherine, Coltell, Oscar, Cabarcas, Felipe, Alzate, Juan F.

“…Abundance and diversity of microbial communities in biosolids are variable and poorly studied in the tropics, and it is known that rainfall is one of the…”
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Contrasting microbiota profiles observed in children carrying either Blastocystis spp. or the commensal amoebas Entamoeba coli or Endolimax nana by Alzate, Juan F., Toro-Londoño, Miguel, Cabarcas, Felipe, Garcia-Montoya, Gisela, Galvan-Diaz, Ana

“…Recent studies have shown how intestinal parasites can modulate gut microbiota. This observation is not surprising since the human intestinal lumen, like any…”
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Complete mitochondrial genome of Phoneutria depilata (Araneae, Ctenidae): New insights into the phylogeny and evolution of spiders by Prada, Carlos F., Hazzi, Nicolas A., Hormiga, Gustavo, Cabarcas, Felipe, Franco, Lida M.

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Annual microbial community dynamics in a full-scale anaerobic sludge digester from a wastewater treatment plant in Colombia by Bedoya, Katherine, Hoyos, Oladier, Zurek, Eduardo, Cabarcas, Felipe, Alzate, Juan F.

“…Anaerobic digestion is a microbe-driven process widely applied to treat activated sludge from municipal wastewater treatment plants. It is one of the most…”
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Assessment of the microbial community and biocide resistance profile in production and injection waters from an Andean oil reservoir in Colombia by Bedoya, Katherine, Niño, Jhorman, Acero, Julia, Cabarcas, Felipe, Alzate, Juan F.

“…Water flooding is a widely applied method for secondary oil recovery. However, this practice introduces exogenous microorganisms into the oil reservoirs that…”
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Microbiota bacteriana asociada al papel moneda de circulación en Colombia by Lizarazo-Medina, Pilar Ximena, Cabarcas Jaramillo, Felipe, Alzate, Juan F.

“…Diariamente los seres humanos están en interacción con objetos de uso continuo, como el papel moneda, sin el conocimiento de que estos almacenan…”
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Tuberculosis in otherwise healthy adults with inherited TNF deficiency by Arias, Andrés A., Neehus, Anna-Lena, Ogishi, Masato, Meynier, Vincent, Krebs, Adam, Lazarov, Tomi, Lee, Angela M., Arango-Franco, Carlos A., Yang, Rui, Orrego, Julio, Corcini Berndt, Melissa, Rojas, Julian, Li, Hailun, Rinchai, Darawan, Erazo-Borrás, Lucia, Han, Ji Eun, Pillay, Bethany, Ponsin, Khoren, Chaldebas, Matthieu, Philippot, Quentin, Bohlen, Jonathan, Rosain, Jérémie, Le Voyer, Tom, Janotte, Till, Amarajeeva, Krishnajina, Soudée, Camille, Brollo, Marion, Wiegmann, Katja, Marquant, Quentin, Seeleuthner, Yoann, Lee, Danyel, Lainé, Candice, Kloos, Doreen, Bailey, Rasheed, Bastard, Paul, Keating, Narelle, Rapaport, Franck, Khan, Taushif, Moncada-Vélez, Marcela, Carmona, María Camila, Obando, Catalina, Alvarez, Jesús, Cataño, Juan Carlos, Martínez-Rosado, Larry Luber, Sanchez, Juan P., Tejada-Giraldo, Manuela, L’Honneur, Anne-Sophie, Agudelo, María L., Perez-Zapata, Lizet J., Arboleda, Diana M., Alzate, Juan Fernando, Cabarcas, Felipe, Zuluaga, Alejandra, Pelham, Simon J., Ensser, Armin, Schmidt, Monika, Velásquez-Lopera, Margarita M., Jouanguy, Emmanuelle, Puel, Anne, Krönke, Martin, Ghirardello, Stefano, Borghesi, Alessandro, Pahari, Susanta, Boisson, Bertrand, Pittaluga, Stefania, Ma, Cindy S., Emile, Jean-François, Notarangelo, Luigi D., Tangye, Stuart G., Marr, Nico, Lachmann, Nico, Salvator, Hélène, Schlesinger, Larry S., Zhang, Peng, Glickman, Michael S., Nathan, Carl F., Geissmann, Frédéric, Abel, Laurent, Franco, José Luis, Bustamante, Jacinta, Casanova, Jean-Laurent, Boisson-Dupuis, Stéphanie

“…Severe defects in human IFNγ immunity predispose individuals to both Bacillus Calmette–Guérin disease and tuberculosis, whereas milder defects predispose only…”
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IL-7-dependent and -independent lineages of IL-7R-dependent human T cells by Arango-Franco, Carlos A, Ogishi, Masato, Unger, Susanne, Delmonte, Ottavia M, Orrego, Julio César, Yatim, Ahmad, Velasquez-Lopera, Margarita M, Zea-Vera, Andrés F, Bohlen, Jonathan, Chbihi, Marwa, Fayand, Antoine, Sánchez, Juan Pablo, Rojas, Julian, Seeleuthner, Yoann, Le Voyer, Tom, Philippot, Quentin, Payne, Kathryn J, Gervais, Adrian, Erazo-Borrás, Lucia V, Correa-Londoño, Luis A, Cederholm, Axel, Gallón-Duque, Alejandro, Goncalves, Pedro, Doisne, Jean-Marc, Horev, Liran, Charmeteau-de Muylder, Bénédicte, Álvarez, Jesús Á, Arboleda, Diana M, Pérez-Zapata, Lizet, Vásquez-Echeverri, Estefanía, Moncada-Vélez, Marcela, López, Juan A, Caicedo, Yolanda, Palterer, Boaz, Patiño, Pablo J, Montoya, Carlos J, Chaldebas, Matthieu, Zhang, Peng, Nguyen, Tina, Ma, Cindy S, Jeljeli, Mohamed, Alzate, Juan F, Cabarcas, Felipe, Khan, Taushif, Rinchai, Darawan, Prétet, Jean-Luc, Boisson, Bertrand, Marr, Nico, Ibrahim, Ruba, Molho-Pessach, Vered, Boisson-Dupuis, Stéphanie, Kiritsi, Dimitra, Barata, João T, Landegren, Nils, Neven, Bénédicte, Abel, Laurent, Lisco, Andrea, Béziat, Vivien, Jouanguy, Emmanuelle, Bustamante, Jacinta, Di Santo, James P, Tangye, Stuart G, Notarangelo, Luigi D, Cheynier, Rémi, Natsuga, Ken, Arias, Andrés A, Franco, José Luis, Warnatz, Klaus, Casanova, Jean-Laurent, Puel, Anne

“…Infants with biallelic IL7R loss-of-function variants have severe combined immune deficiency (SCID) characterized by the absence of autologous T lymphocytes,…”
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Comparative genomic analysis of the principal Cryptosporidium species that infect humans by Arias-Agudelo, Laura M, Garcia-Montoya, Gisela, Cabarcas, Felipe, Galvan-Diaz, Ana L, Alzate, Juan F

“…parasites are ubiquitous and can infect a broad range of vertebrates and are considered the most frequent protozoa associated with waterborne parasitic…”
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Early-Onset Invasive Infection Due to Corynespora cassiicola Associated with Compound Heterozygous CARD9 Mutations in a Colombian Patient by Arango-Franco, Carlos A., Moncada-Vélez, Marcela, Beltrán, Claudia Patricia, Berrío, Indira, Mogollón, Cristian, Restrepo, Andrea, Trujillo, Mónica, Osorio, Sara Daniela, Castro, Lorena, Gómez, Lina Vanessa, Muñoz, Ana María, Molina, Verónica, del Río Cobaleda, Delsy Yurledy, Ruiz, Ana Cristina, Garcés, Carlos, Alzate, Juan Fernando, Cabarcas, Felipe, Orrego, Julio Cesar, Casanova, Jean-Laurent, Bustamante, Jacinta, Puel, Anne, Arias, Andrés Augusto, Franco, José Luis

“…Purpose CARD9 deficiency is an inborn error of immunity that predisposes otherwise healthy humans to mucocutaneous and invasive fungal infections, mostly…”
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Approaching the Slepian–Wolf boundary using practical channel codes by Garcia-Frias, Javier, Cabarcas, Felipe

“…We review the interpretation of the Slepian–Wolf result for compression of correlated sources as a problem of channel coding with side information. Based on…”
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Inherited p40^sup phox^ deficiency differs from classic chronic granulomatous disease by van de Geer, Annemarie, van Hamme, John L, van Houdt, Michel, van Leeuwen, Karin, Verkuijlen, Paul J H, van den Berg, Timo K, Alzate, Juan F, Arango-Franco, Carlos A, Batura, Vritika, Bernasconi, Andrea R, Boardman, Barbara, Nieto-Patlán, Alejandro, Booth, Claire, Burns, Siobhan O, Cabarcas, Felipe, Bensussan, Nadine Cerf, Charbit-Henrion, Fabienne, Corveleyn, Anniek, Deswarte, Caroline, Azcoiti, María Esnaola, Foell, Dirk, Gallin, John I, Kuhns, Douglas B, Garcés, Carlos, Guedes, Margarida, Hinze, Claas H, Holland, Steven M, Hughes, Stephen M, Ibañez, Patricio, Malech, Harry L, Meyts, Isabelle, Moncada-Velez, Marcela, Moriya, Kunihiko, Tool, Anton T J, Neves, Esmeralda, Oleastro, Matias, Perez, Laura, Rattina, Vimel, Oleaga-Quintas, Carmen, Warner, Neil, Muise, Aleixo M, López, Jeanet Serafín, Trindade, Eunice, Vasconcelos, Julia, Arias, Andrés A, Vermeire, Séverine, Wittkowski, Helmut, Worth, Austen, Abel, Laurent, Dinauer, Mary C, Arkwright, Peter D, Roos, Dirk, Casanova, Jean-Laurent, Kuijpers, Taco W, Bustamante, Jacinta, Bouaziz, Matthieu, de Boer, Martin, Franco, José Luis, Gazendam, Roel P

“…Biallelic loss-of-function (LOF) mutations of the NCF4 gene, encoding the p40phox subunit of the phagocyte NADPH oxidase, have been described in only 1…”
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Transcriptome profiling of the cysticercus stage of the laboratory model Taenia crassiceps, strain ORF by García-Montoya, Gisela M., Mesa-Arango, Jairo A., Isaza-Agudelo, Juan P., Agudelo-Lopez, Sonia P., Cabarcas, Felipe, Barrera, Luis F., Alzate, Juan F.

“…RNA-seq technology was used to characterize the transcriptome and to identify putative secreted antigens of the cysticercus stage of Taenia crassiceps…”
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