Search Results - "CHAVENT, Matthieu"

Game on, science - how video game technology may help biologists tackle visualization challenges by Lv, Zhihan, Tek, Alex, Da Silva, Franck, Empereur-mot, Charly, Chavent, Matthieu, Baaden, Marc

“…The video games industry develops ever more advanced technologies to improve rendering, image quality, ergonomics and user experience of their creations…”
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The conical shape of DIM lipids promotes Mycobacterium tuberculosis infection of macrophages by Augenstreich, Jacques, Haanappel, Evert, Ferré, Guillaume, Czaplicki, Georges, Jolibois, Franck, Destainville, Nicolas, Guilhot, Christophe, Milon, Alain, Astarie-Dequeker, Catherine, Chavent, Matthieu

“…Phthiocerol dimycocerosate (DIM) is a major virulence factor of the pathogen Mycobacterium tuberculosis (Mtb). While this lipid promotes the entry of Mtb into…”
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Structural Basis of Teneurin-Latrophilin Interaction in Repulsive Guidance of Migrating Neurons by del Toro, Daniel, Carrasquero-Ordaz, Maria A., Chu, Amy, Ruff, Tobias, Shahin, Meriam, Jackson, Verity A., Chavent, Matthieu, Berbeira-Santana, Miguel, Seyit-Bremer, Goenuel, Brignani, Sara, Kaufmann, Rainer, Lowe, Edward, Klein, Rüdiger, Seiradake, Elena

“…Teneurins are ancient metazoan cell adhesion receptors that control brain development and neuronal wiring in higher animals. The extracellular C terminus binds…”
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Protein crowding and lipid complexity influence the nanoscale dynamic organization of ion channels in cell membranes by Duncan, Anna L., Reddy, Tyler, Koldsø, Heidi, Hélie, Jean, Fowler, Philip W., Chavent, Matthieu, Sansom, Mark S. P.

“…Cell membranes are crowded and complex environments. To investigate the effect of protein-lipid interactions on dynamic organization in mammalian cell…”
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Supramolecular organisation and dynamics of mannosylated phosphatidylinositol lipids in the mycobacterial plasma membrane by Brown, Chelsea M., Corey, Robin A., Gao, Ya, Kyo Choi, Yeol, Gilleron, Martine, Destainville, Nicolas, Fullam, Elizabeth, Im, Wonpil, Chavent, Matthieu G., Stansfeld, Phillip J.

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Membrane stiffness is modified by integral membrane proteins by Fowler, Philip W, Hélie, Jean, Duncan, Anna, Chavent, Matthieu, Koldsø, Heidi, Sansom, Mark S P

“…The ease with which a cell membrane can bend and deform is important for a wide range of biological functions. Peripheral proteins that induce curvature in…”
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How nanoscale protein interactions determine the mesoscale dynamic organisation of bacterial outer membrane proteins by Chavent, Matthieu, Duncan, Anna L., Rassam, Patrice, Birkholz, Oliver, Hélie, Jean, Reddy, Tyler, Beliaev, Dmitry, Hambly, Ben, Piehler, Jacob, Kleanthous, Colin, Sansom, Mark S. P.

“…The spatiotemporal organisation of membranes is often characterised by the formation of large protein clusters. In Escherichia coli , outer membrane protein…”
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Bendix: intuitive helix geometry analysis and abstraction by DAHL, Anna Caroline E, CHAVENT, Matthieu, SANSOM, Mark S. P

“…The flexibility of α-helices is important for membrane protein function and calls for better visualization and analysis. Software is presented that quantifies…”
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Lipid-Loving ANTs: Molecular Simulations of Cardiolipin Interactions and the Organization of the Adenine Nucleotide Translocase in Model Mitochondrial Membranes by Hedger, George, Rouse, Sarah L, Domański, Jan, Chavent, Matthieu, Koldsø, Heidi, Sansom, Mark S. P

“…The exchange of ADP and ATP across the inner mitochondrial membrane is a fundamental cellular process. This exchange is facilitated by the adenine nucleotide…”
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Super-complexes of adhesion GPCRs and neural guidance receptors by Jackson, Verity A., Mehmood, Shahid, Chavent, Matthieu, Roversi, Pietro, Carrasquero, Maria, del Toro, Daniel, Seyit-Bremer, Goenuel, Ranaivoson, Fanomezana M., Comoletti, Davide, Sansom, Mark S. P., Robinson, Carol V., Klein, Rüdiger, Seiradake, Elena

“…Latrophilin adhesion-GPCRs (Lphn1–3 or ADGRL1–3) and Unc5 cell guidance receptors (Unc5A–D) interact with FLRT proteins (FLRT1–3), thereby promoting cell…”
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Proteasome complexes experience profound structural and functional rearrangements throughout mammalian spermatogenesis by Živković, Dušan, Sanchez Dafun, Angelique, Menneteau, Thomas, Schahl, Adrien, Lise, Sandrine, Kervarrec, Christine, Toste Rêgo, Ana, da Fonseca, Paula C A, Chavent, Matthieu, Pineau, Charles, Burlet-Schiltz, Odile, Marcoux, Julien, Bousquet, Marie-Pierre

“…During spermatogenesis, spermatogonia undergo a series of mitotic and meiotic divisions on their path to spermatozoa. To achieve this, a succession of…”
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MDverse, shedding light on the dark matter of molecular dynamics simulations by Tiemann, Johanna K S, Szczuka, Magdalena, Bouarroudj, Lisa, Oussaren, Mohamed, Garcia, Steven, Howard, Rebecca J, Delemotte, Lucie, Lindahl, Erik, Baaden, Marc, Lindorff-Larsen, Kresten, Chavent, Matthieu, Poulain, Pierre

“…The rise of open science and the absence of a global dedicated data repository for molecular dynamics (MD) simulations has led to the accumulation of MD files…”
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Structures of the EphA2 Receptor at the Membrane: Role of Lipid Interactions by Chavent, Matthieu, Seiradake, Elena, Jones, E. Yvonne, Sansom, Mark S.P.

“…Ephs are transmembrane receptors that mediate cell-cell signaling. The N-terminal ectodomain binds ligands and enables receptor clustering, which activates the…”
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Design – a new way to look at old molecules by Spalvieri, Davide, Mauviel, Anne-Marine, Lambert, Matthieu, Férey, Nicolas, Sacquin-Mora, Sophie, Chavent, Matthieu, Baaden, Marc

“…We discuss how design enriches molecular science, particularly structural biology and bioinformatics. We present two use cases, one in academic practice and…”
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Molecular Modeling and Simulation of the Mycobacterial Cell Envelope: From Individual Components to Cell Envelope Assemblies by Brown, Turner, Chavent, Matthieu, Im, Wonpil

“…Unlike typical Gram-positive bacteria, the cell envelope of mycobacteria is unique and composed of a mycobacterial outer membrane, also known as the…”
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Visualizing protein structures - tools and trends by Martinez, Xavier, Chavent, Matthieu, Baaden, Marc

“…Molecular visualization is fundamental in the current scientific literature, textbooks and dissemination materials. It provides an essential support for…”
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Molecular Simulations of Gram-Negative Bacterial Membranes: A Vignette of Some Recent Successes by Parkin, Jamie, Chavent, Matthieu, Khalid, Syma

“…In the following review we use recent examples from the literature to discuss progress in the area of atomistic and coarse-grained molecular dynamics…”
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Molecular dynamics simulations of membrane proteins and their interactions: from nanoscale to mesoscale by Chavent, Matthieu, Duncan, Anna L, Sansom, Mark SP

“…[Display omitted] •Simulations provide a computational tool to probe membrane structure and dynamics.•Simulations can successfully predict lipid binding sites…”
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Cholesterol Interaction Sites on the Transmembrane Domain of the Hedgehog Signal Transducer and Class F G Protein-Coupled Receptor Smoothened by Hedger, George, Koldsø, Heidi, Chavent, Matthieu, Siebold, Christian, Rohatgi, Rajat, Sansom, Mark S.P.

“…Transduction of Hedgehog signals across the plasma membrane is facilitated by the class F G-protein-coupled-receptor (GPCR) Smoothened (SMO). Recent studies…”
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Combining MD Simulations and 31P NMR Spectroscopy to Decipher Lamellar to Hexagonal Phase Transition Promoted by Diverse Lipid Types by Chavent, Matthieu, Haanappell, Evert, Milon, Alain

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