Search Results - "CHAKRABARTI, M"

Target-Specific Precision of CRISPR-Mediated Genome Editing by Chakrabarti, Anob M., Henser-Brownhill, Tristan, Monserrat, Josep, Poetsch, Anna R., Luscombe, Nicholas M., Scaffidi, Paola

“…The CRISPR-Cas9 system has successfully been adapted to edit the genome of various organisms. However, our ability to predict the editing outcome at specific…”
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Electrochemical approaches to the production of graphene flakes and their potential applications by Low, C.T.J., Walsh, F.C., Chakrabarti, M.H., Hashim, M.A., Hussain, M.A.

“…Graphene (GN) has many beneficial properties that encourage wide applications. Various manufacturing procedures are detailed in the literature but most are…”
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TDP-43 condensation properties specify its RNA-binding and regulatory repertoire by Hallegger, Martina, Chakrabarti, Anob M., Lee, Flora C.Y., Lee, Bo Lim, Amalietti, Aram G., Odeh, Hana M., Copley, Katie E., Rubien, Jack D., Portz, Bede, Kuret, Klara, Huppertz, Ina, Rau, Frédérique, Patani, Rickie, Fawzi, Nicolas L., Shorter, James, Luscombe, Nicholas M., Ule, Jernej

“…Mutations causing amyotrophic lateral sclerosis (ALS) often affect the condensation properties of RNA-binding proteins (RBPs). However, the role of RBP…”
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Application of carbon materials in redox flow batteries by Chakrabarti, M.H., Brandon, N.P., Hajimolana, S.A., Tariq, F., Yufit, V., Hashim, M.A., Hussain, M.A., Low, C.T.J., Aravind, P.V.

“…The redox flow battery (RFB) has been the subject of state-of-the-art research by several groups around the world. Most work commonly involves the application…”
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Removal of total ammonia nitrogen (TAN), nitrate and total organic carbon (TOC) from aquaculture wastewater using electrochemical technology: A review by Mook, W.T., Chakrabarti, M.H., Aroua, M.K., Khan, G.M.A., Ali, B.S., Islam, M.S., Abu Hassan, M.A.

“…Protein rich wastes from aquaculture systems result in total ammonia nitrogen (TAN), total organic carbon (TOC) and biochemical oxygen demand (BOD). A number…”
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Heteromeric RNP Assembly at LINEs Controls Lineage-Specific RNA Processing by Attig, Jan, Agostini, Federico, Gooding, Clare, Chakrabarti, Anob M., Singh, Aarti, Haberman, Nejc, Zagalak, Julian A., Emmett, Warren, Smith, Christopher W.J., Luscombe, Nicholas M., Ule, Jernej

“…Long mammalian introns make it challenging for the RNA processing machinery to identify exons accurately. We find that LINE-derived sequences (LINEs)…”
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clipplotr -a comparative visualization and analysis tool for CLIP data by Chakrabarti, Anob M, Capitanchik, Charlotte, Ule, Jernej, Luscombe, Nicholas M

“…CLIP technologies are now widely used to study RNA-protein interactions and many data sets are now publicly available. An important first step in CLIP data…”
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Integrated transcriptome landscape of ALS identifies genome instability linked to TDP-43 pathology by Ziff, Oliver J., Neeves, Jacob, Mitchell, Jamie, Tyzack, Giulia, Martinez-Ruiz, Carlos, Luisier, Raphaelle, Chakrabarti, Anob M., McGranahan, Nicholas, Litchfield, Kevin, Boulton, Simon J., Al-Chalabi, Ammar, Kelly, Gavin, Humphrey, Jack, Patani, Rickie

“…Amyotrophic Lateral Sclerosis (ALS) causes motor neuron degeneration, with 97% of cases exhibiting TDP-43 proteinopathy. Elucidating pathomechanisms has been…”
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A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3′ UTR structure to RNA metabolism by Chakrabarti, Anob M, Iosub, Ira A, Lee, Flora C Y, Ule, Jernej, Luscombe, Nicholas M

“…Abstract The structure of mRNA molecules plays an important role in its interactions with trans-acting factors, notably RNA binding proteins (RBPs), thus…”
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m6a methylation orchestrates IMP1 regulation of microtubules during human neuronal differentiation by Klein, Pierre, Petrić Howe, Marija, Harley, Jasmine, Crook, Harry, Esteban Serna, Sofia, Roumeliotis, Theodoros I., Choudhary, Jyoti S., Chakrabarti, Anob M., Luisier, Raphaëlle, Patani, Rickie, Ramos, Andres

“…Neuronal differentiation requires building a complex intracellular architecture, and therefore the coordinated regulation of defined sets of genes. RNA-binding…”
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Evaluation of electrolytes for redox flow battery applications by Chakrabarti, M.H., Dryfe, R.A.W., Roberts, E.P.L.

“…A number of redox systems have been investigated in this work with the aim of identifying electrolytes suitable for testing redox flow battery cell designs…”
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Thermal stress management of a solid oxide fuel cell using neural network predictive control by Hajimolana, S.A., Tonekabonimoghadam, S.M., Hussain, M.A., Chakrabarti, M.H., Jayakumar, N.S., Hashim, M.A.

“…In SOFC (solid oxide fuel cell) systems operating at high temperatures, temperature fluctuation induces a thermal stress in the electrodes and electrolyte…”
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Reactive astrocytes in ALS display diminished intron retention by Ziff, Oliver J, Taha, Doaa M, Crerar, Hamish, Clarke, Benjamin E, Chakrabarti, Anob M, Kelly, Gavin, Neeves, Jacob, Tyzack, Giulia E, Luscombe, Nicholas M, Patani, Rickie

“…Abstract Reactive astrocytes are implicated in amyotrophic lateral sclerosis (ALS), although the mechanisms controlling reactive transformation are unknown. We…”
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Progress in the electrochemical modification of graphene-based materials and their applications by Chakrabarti, M.H., Low, C.T.J., Brandon, N.P., Yufit, V., Hashim, M.A., Irfan, M.F., Akhtar, J., Ruiz-Trejo, E., Hussain, M.A.

“…•Six means of functionalizing graphene electrochemically is reviewed.•Electrochemical functionalization is relatively new to other standard methods.•The…”
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Widespread 3′UTR capped RNAs derive from G-rich regions in proximity to AGO2 binding sites by Haberman, Nejc, Digby, Holly, Faraway, Rupert, Cheung, Rebecca, Chakrabarti, Anob M., Jobbins, Andrew M., Parr, Callum, Yasuzawa, Kayoko, Kasukawa, Takeya, Yip, Chi Wai, Kato, Masaki, Takahashi, Hazuki, Carninci, Piero, Vernia, Santiago, Ule, Jernej, Sibley, Christopher R., Martinez-Sanchez, Aida, Lenhard, Boris

“…The 3′ untranslated region (3′UTR) plays a crucial role in determining mRNA stability, localisation, translation and degradation. Cap analysis of gene…”
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Comparison of the prognostic value of selected markers of the systemic inflammatory response in patients with colorectal cancer by LEITCH, E. F, CHAKRABARTI, M, CROZIER, J. E. M, MCKEE, R. F, ANDERSON, J. H, HORGAN, P. G, MCMILLAN, D. C

“…There is increasing evidence that the presence of a systemic inflammatory response plays an important role in predicting survival in patients with colorectal…”
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A systems view of spliceosomal assembly and branchpoints with iCLIP by Briese, Michael, Haberman, Nejc, Sibley, Christopher R., Faraway, Rupert, Elser, Andrea S., Chakrabarti, Anob M., Wang, Zhen, König, Julian, Perera, David, Wickramasinghe, Vihandha O., Venkitaraman, Ashok R., Luscombe, Nicholas M., Saieva, Luciano, Pellizzoni, Livio, Smith, Christopher W. J., Curk, Tomaž, Ule, Jernej

“…Studies of spliceosomal interactions are challenging due to their dynamic nature. Here we used spliceosome iCLIP, which immunoprecipitates SmB along with small…”
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RGS4 RNA Secondary Structure Mediates Staufen2 RNP Assembly in Neurons by Fernández-Moya, Sandra M, Ehses, Janina, Bauer, Karl E, Schieweck, Rico, Chakrabarti, Anob M, Lee, Flora C Y, Illig, Christin, Luscombe, Nicholas M, Harner, Max, Ule, Jernej, Kiebler, Michael A

“…RNA-binding proteins (RBPs) act as posttranscriptional regulators controlling the fate of target mRNAs. Unraveling how RNAs are recognized by RBPs and in turn…”
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Replication of optical microlens array using photoresist coated molds by Chakrabarti, M, Dam-Hansen, C, Stubager, J, Pedersen, T F, Pedersen, H C

“…A cost reduced method of producing injection molding tools is reported and demonstrated for the fabrication of optical microlens arrays. A standard…”
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Performance evaluation of biodiesel from used domestic waste oils: A review by Diya’uddeen, Basheer Hasan, Abdul Aziz, A.R., Daud, W.M.A.W., Chakrabarti, M.H.

“…Global warming, high-energy demand and availability of new technologies are among the factors catalyzing the search for alternative sources of energy…”
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