Search Results - "CARRINGTON, James C"

Evolution and Functional Diversification of MIRNA Genes by Cuperus, Josh T., Fahlgren, Noah, Carrington, James C.

“…MicroRNAs (miRNAs) are small regulatory RNAs found in diverse eukaryotic lineages. In plants, a minority of annotated MIRNA gene families are conserved between…”
Get full text

Specialization and evolution of endogenous small RNA pathways by Carrington, James C, Chapman, Elisabeth J

“…The specificity of RNA silencing is conferred by small RNA guides that are processed from structured RNA or dsRNA. The core components for small RNA biogenesis…”
Get full text

Simultaneous CRISPR/Cas9‐mediated editing of cassava eIF4E isoforms nCBP‐1 and nCBP‐2 reduces cassava brown streak disease symptom severity and incidence by Gomez, Michael A., Lin, Z. Daniel, Moll, Theodore, Chauhan, Raj Deepika, Hayden, Luke, Renninger, Kelley, Beyene, Getu, Taylor, Nigel J., Carrington, James C., Staskawicz, Brian J., Bart, Rebecca S.

“…Summary Cassava brown streak disease (CBSD) is a major constraint on cassava yields in East and Central Africa and threatens production in West Africa. CBSD is…”
Get full text

Role of MicroRNAs in Plant and Animal Development by Carrington, James C., Ambros, Victor

“…Small RNAs, including microRNAs (miRNAs) and short interfering RNAs (siRNAs), are key components of an evolutionarily conserved system of RNA-based gene…”
Get full text

Roles and programming of Arabidopsis ARGONAUTE proteins during Turnip mosaic virus infection by Garcia-Ruiz, Hernan, Carbonell, Alberto, Hoyer, J Steen, Fahlgren, Noah, Gilbert, Kerrigan B, Takeda, Atsushi, Giampetruzzi, Annalisa, Garcia Ruiz, Mayra T, McGinn, Michaela G, Lowery, Nicholas, Martinez Baladejo, Maria T, Carrington, James C

“…In eukaryotes, ARGONAUTE proteins (AGOs) associate with microRNAs (miRNAs), short interfering RNAs (siRNAs), and other classes of small RNAs to regulate target…”
Get full text

CG gene body DNA methylation changes and evolution of duplicated genes in cassava by Wang, Haifeng, Beyene, Getu, Zhai, Jixian, Feng, Suhua, Fahlgren, Noah, Taylor, Nigel J., Bart, Rebecca, Carrington, James C., Jacobsen, Steven E., Ausin, Israel

“…DNA methylation is important for the regulation of gene expression and the silencing of transposons in plants. Here we present genome-wide methylation patterns…”
Get full text

Formation of complexes at plasmodesmata for potyvirus intercellular movement is mediated by the viral protein P3N-PIPO by Wei, Taiyun, Zhang, Changwei, Hong, Jian, Xiong, Ruyi, Kasschau, Kristin D, Zhou, Xueping, Carrington, James C, Wang, Aiming

“…Intercellular transport of viruses through cytoplasmic connections, termed plasmodesmata (PD), is essential for systemic infection in plants by viruses…”
Get full text

New Generation of Artificial MicroRNA and Synthetic Trans-Acting Small Interfering RNA Vectors for Efficient Gene Silencing in Arabidopsis by Carbonell, Alberto, Takeda, Atsushi, Fahlgren, Noah, Johnson, Simon C., Cuperus, Josh T., Carrington, James C.

“…Artificial microRNAs (amiRNAs) and synthetic trans-acting small interfering RNAs (syn-tasiRNAs) are used for small RNA-based, specific gene silencing or…”
Get full text

A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria by Fahlgren, Noah, Feldman, Maximilian, Gehan, Malia A., Wilson, Melinda S., Shyu, Christine, Bryant, Douglas W., Hill, Steven T., McEntee, Colton J., Warnasooriya, Sankalpi N., Kumar, Indrajit, Ficor, Tracy, Turnipseed, Stephanie, Gilbert, Kerrigan B., Brutnell, Thomas P., Carrington, James C., Mockler, Todd C., Baxter, Ivan

“…Phenotyping has become the rate-limiting step in using large-scale genomic data to understand and improve agricultural crops. Here, the Bellwether Phenotyping…”
Get full text

Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants by Carbonell, Alberto, Fahlgren, Noah, Garcia-Ruiz, Hernan, Gilbert, Kerrigan B., Montgomery, Taiowa A., Nguyen, Tammy, Cuperus, Josh T., Carrington, James C.

“…In RNA-directed silencing pathways, ternary complexes result from small RNA-guided ARGONAUTE (AGO) associating with target transcripts. Target transcripts are…”
Get full text

Arabidopsis RNA-Dependent RNA Polymerases and Dicer-Like Proteins in Antiviral Defense and Small Interfering RNA Biogenesis during Turnip Mosaic Virus Infection by Garcia-Ruiz, Hernan, Takeda, Atsushi, Chapman, Elisabeth J, Sullivan, Christopher M, Fahlgren, Noah, Brempelis, Katherine J, Carrington, James C

“…Plants respond to virus infections by activation of RNA-based silencing, which limits infection at both the single-cell and system levels. Viruses encode RNA…”
Get full text

High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes by Fahlgren, Noah, Howell, Miya D, Kasschau, Kristin D, Chapman, Elisabeth J, Sullivan, Christopher M, Cumbie, Jason S, Givan, Scott A, Law, Theresa F, Grant, Sarah R, Dangl, Jeffery L, Carrington, James C

“…In plants, microRNAs (miRNAs) comprise one of two classes of small RNAs that function primarily as negative regulators at the posttranscriptional level…”
Get full text

Small RNA Duplexes Function as Mobile Silencing Signals Between Plant Cells by Dunoyer, Patrice, Schott, Gregory, Himber, Christophe, Meyer, Denise, Takeda, Atsushi, Carrington, James C, Voinnet, Olivier

“…In the plant RNA interference (RNAi) pathway, 21-nucleotide duplexes of small interfering RNA (siRNA) are processed from longer double-stranded RNA precursors…”
Get full text

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis by Carrington, James C, Fahlgren, Noah, Cuperus, Josh T, Carbonell, Alberto, Garcia-Ruiz, Hernan, Gilbert, Sunny D, Burke, Russell T, Montgomery, Taiowa A, Takeda, Atsushi, Sullivan, Christopher M

“…In some organisms, miRNA-mediated regulation leads to RNA-dependent RNA polymerase based amplification, involving generation of secondary siRNAs that target…”
Get full text

Sequence and Expression Differences Underlie Functional Specialization of Arabidopsis MicroRNAs miR159 and miR319 by Palatnik, Javier F., Wollmann, Heike, Schommer, Carla, Schwab, Rebecca, Boisbouvier, Jerôme, Rodriguez, Ramiro, Warthmann, Norman, Allen, Edwards, Dezulian, Tobias, Huson, Daniel, Carrington, James C., Weigel, Detlef

“…Many microRNAs (miRNAs) are encoded by small gene families. In a third of all conserved Arabidopsis miRNA families, members vary at two or more nucleotide…”
Get full text

Improving cassava bacterial blight resistance by editing the epigenome by Veley, Kira M., Elliott, Kiona, Jensen, Greg, Zhong, Zhenhui, Feng, Suhua, Yoder, Marisa, Gilbert, Kerrigan B., Berry, Jeffrey C., Lin, Zuh-Jyh Daniel, Ghoshal, Basudev, Gallego-Bartolomé, Javier, Norton, Joanna, Motomura-Wages, Sharon, Carrington, James C., Jacobsen, Steven E., Bart, Rebecca S.

“…Pathogens rely on expression of host susceptibility ( S ) genes to promote infection and disease. As DNA methylation is an epigenetic modification that affects…”
Get full text

Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids by Ha, Misook, Lu, Jie, Tian, Lu, Ramachandran, Vanitharani, Kasschau, Kristin D, Chapman, Elisabeth J, Carrington, James C, Chen, Xuemei, Wang, Xiu-Jie, Chen, Z. Jeffrey

“…Small RNAs, including microRNAs (miRNAs), small interfering RNAs (siRNAs), and trans-acting siRNAs (tasiRNAs), control gene expression and epigenetic…”
Get full text

Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post‐germination stages by Liu, Po‐Pu, Montgomery, Taiowa A., Fahlgren, Noah, Kasschau, Kristin D., Nonogaki, Hiroyuki, Carrington, James C.

“…Summary AUXIN RESPONSE FACTORS (ARFs) are transcription factors involved in auxin signal transduction during many stages of plant growth development. ARF10,…”
Get full text

microRNA-Directed Phasing during Trans-Acting siRNA Biogenesis in Plants by Allen, Edwards, Xie, Zhixin, Gustafson, Adam M., Carrington, James C.

“…Plants and animals use small RNAs (microRNAs [miRNAs] and siRNAs) as guides for posttranscriptional and epigenetic regulation. In plants, miRNAs and…”
Get full text

Pattern formation via small RNA mobility by Chitwood, Daniel H, Nogueira, Fabio T S, Howell, Miya D, Montgomery, Taiowa A, Carrington, James C, Timmermans, Marja C P

“…MicroRNAs and trans-acting siRNAs (ta-siRNAs) have important regulatory roles in development. Unlike other developmentally important regulatory molecules,…”
Get full text