Search Results - "CAMPBELL, Nathan R"

Genotyping‐in‐Thousands by sequencing (GT‐seq): A cost effective SNP genotyping method based on custom amplicon sequencing by Campbell, Nathan R., Harmon, Stephanie A., Narum, Shawn R.

“…Genotyping‐in‐Thousands by sequencing (GT‐seq) is a method that uses next‐generation sequencing of multiplexed PCR products to generate genotypes from…”
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Transcriptomic response to heat stress among ecologically divergent populations of redband trout by Narum, Shawn R, Campbell, Nathan R

“…As ectothermic organisms have evolved to differing aquatic climates, the molecular basis of thermal adaptation is a key area of research. In this study, we…”
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Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout by Hecht, Benjamin C., Campbell, Nathan R., Holecek, Dean E., Narum, Shawn R.

“…Little is known of the genetic basis of migration despite the ecological benefits migratory species provide to their communities and their rapid global decline…”
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Thermal adaptation and acclimation of ectotherms from differing aquatic climates by Narum, Shawn R., Campbell, Nathan R., Meyer, Kevin A., Miller, Michael R., Hardy, Ronald W.

“…To elucidate the mechanisms of thermal adaptation and acclimation in ectothermic aquatic organisms from differing climates, we used a common‐garden experiment…”
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Genotyping‐in‐Thousands by sequencing (GT‐seq) panel development and application to minimally invasive DNA samples to support studies in molecular ecology by Schmidt, Danielle A., Campbell, Nathan R., Govindarajulu, Purnima, Larsen, Karl W., Russello, Michael A.

“…Minimally invasive sampling (MIS) is widespread in wildlife studies; however, its utility for massively parallel DNA sequencing (MPS) is limited. Poor sample…”
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Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species by Hess, Jon E., Campbell, Nathan R., Close, David A., Docker, Margaret F., Narum, Shawn R.

“…Unlike most anadromous fishes that have evolved strict homing behaviour, Pacific lamprey (Entosphenus tridentatus) seem to lack philopatry as evidenced by…”
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Use of genotyping by sequencing data to develop a high-throughput and multifunctional SNP panel for conservation applications in Pacific lamprey by Hess, Jon E., Campbell, Nathan R., Docker, Margaret F., Baker, Cyndi, Jackson, Aaron, Lampman, Ralph, McIlraith, Brian, Moser, Mary L., Statler, David P., Young, William P., Wildbill, Andrew J., Narum, Shawn R.

“…Next‐generation sequencing data can be mined for highly informative single nucleotide polymorphisms (SNPs) to develop high‐throughput genomic assays for…”
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Development and validation of a GT‐seq panel for genetic monitoring in a threatened species using minimally invasive sampling by Garrett, Molly J., Nerkowski, Stacey A., Kieran, Shannon, Campbell, Nathan R., Barbosa, Soraia, Conway, Courtney J., Hohenlohe, Paul A., Waits, Lisette P.

“…Minimally invasive samples are often the best option for collecting genetic material from species of conservation concern, but they perform poorly in many…”
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Adaptation of redband trout in desert and montane environments by NARUM, SHAWN R., CAMPBELL, NATHAN R., KOZFKAY, CHRISTINE C., MEYER, KEVIN A.

“…Natural populations that evolve under extreme climates are likely to diverge because of selection in local environments. To explore whether local adaptation…”
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Inversion Genotyping in the Anopheles gambiae Complex Using High-Throughput Array and Sequencing Platforms by Love, R Rebecca, Pombi, Marco, Guelbeogo, Moussa W, Campbell, Nathan R, Stephens, Melissa T, Dabire, Roch K, Costantini, Carlo, Della Torre, Alessandra, Besansky, Nora J

“…Chromosomal inversion polymorphisms have special importance in the complex of malaria vector mosquitoes, due to their role in local adaptation and range…”
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High-Throughput Genotyping of Common Chromosomal Inversions in the Afrotropical Malaria Mosquito Anopheles Funestus by Lukindu, Martin, Love, R. Rebecca, Guelbeogo, Moussa W., Small, Scott T., Stephens, Melissa T., Campbell, Nathan R., Sagnon, N’Fale, Costantini, Carlo, Besansky, Nora J.

“…Polymorphic chromosomal inversions have been implicated in local adaptation. In anopheline mosquitoes, inversions also contribute to epidemiologically relevant…”
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Population differentiation determined from putative neutral and divergent adaptive genetic markers in Eulachon (Thaleichthys pacificus, Osmeridae), an anadromous Pacific smelt by Candy, John R., Campbell, Nathan R., Grinnell, Matthew H., Beacham, Terry D., Larson, Wesley A., Narum, Shawn R.

“…Twelve eulachon (Thaleichthys pacificus, Osmeridae) populations ranging from Cook Inlet, Alaska and along the west coast of North America to the Columbia River…”
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Patterns of genomic variation in Coho salmon following reintroduction to the interior Columbia River by Campbell, Nathan R., Kamphaus, Cory, Murdoch, Keely, Narum, Shawn R.

“…Coho salmon were extirpated in the mid‐20th century from the interior reaches of the Columbia River but were reintroduced with relatively abundant source…”
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Association mapping of disease resistance traits in rainbow trout using restriction site associated DNA sequencing by Campbell, Nathan R, LaPatra, Scott E, Overturf, Ken, Towner, Richard, Narum, Shawn R

“…Recent advances in genotyping-by-sequencing have enabled genome-wide association studies in nonmodel species including those in aquaculture programs. As with…”
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Development of 54 novel single-nucleotide polymorphism (SNP) assays for sockeye and coho salmon and assessment of available SNPs to differentiate stocks within the Columbia River by CAMPBELL, NATHAN R, NARUM, SHAWN R

“…Single-nucleotide polymorphisms (SNPs) have potential for broad application in population and conservation genetics, but availability of these markers is…”
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Quantitative PCR assessment of microsatellite and SNP genotyping with variable quality DNA extracts by Campbell, Nathan R, Narum, Shawn R

“…In this study we developed eight quantitative PCR (qPCR) assays to evaluate the starting copy number of nuclear and mitochondrial DNA fragments ranging from 75…”
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Characterization of 22 novel single nucleotide polymorphism markers in steelhead and rainbow trout by CAMPBELL, NATHAN R, OVERTURF, KEN, NARUM, SHAWN R

“…Thirty-two individuals representing coastal and inland populations of steelhead and rainbow trout (Oncorhynchus mykiss) were sequenced at 18 expressed sequence…”
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Discovery and characterization of novel genetic markers for use in the management of Lahontan cutthroat trout (Oncorhynchus clarkii henshawi) by Pritchard, Victoria L., Campbell, Nathan R., Narum, Shawn R., Peacock, Mary M., Garza, John CARLOS

“…The Lahontan cutthroat trout (Oncorhynchus clarkii henshawi) is threatened by habitat destruction, over‐harvest and hybridization with nonnative trout…”
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Sequence Divergence of Heat Shock Genes within and among 3 Oncorhynchids by Narum, Shawn R, Campbell, Nathan R

“…Heat shock proteins (Hsps) are induced in response to high temperatures and other stressors, and sequence variation plays a role in regulation of expression of…”
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Relative Genetic Diversity Estimates among Four Pacific Salmonids by Campbell, Nathan R., Narum, Shawn R.

“…The genetic diversity within a species is a reflection of its evolutionary past and ongoing mutation, drift, and adaptation. Species that occupy a diverse…”
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