Search Results - "C Archer, John A"

Toward an understanding of the molecular mechanisms of barnacle larval settlement: a comparative transcriptomic approach by Chen, Zhang-Fan, Matsumura, Kiyotaka, Wang, Hao, Arellano, Shawn M, Yan, Xingcheng, Alam, Intikhab, Archer, John A C, Bajic, Vladimir B, Qian, Pei-Yuan

“…The barnacle Balanus amphitrite is a globally distributed biofouler and a model species in intertidal ecology and larval settlement studies. However, a lack of…”
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Importance of the Genetic Diversity within the Mycobacterium tuberculosis Complex for the Development of Novel Antibiotics and Diagnostic Tests of Drug Resistance by Köser, Claudio U, Feuerriegel, Silke, Summers, David K, Archer, John A C, Niemann, Stefan

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Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints by Niemann, Stefan, Köser, Claudio U, Gagneux, Sebastien, Plinke, Claudia, Homolka, Susanne, Bignell, Helen, Carter, Richard J, Cheetham, R Keira, Cox, Anthony, Gormley, Niall A, Kokko-Gonzales, Paula, Murray, Lisa J, Rigatti, Roberto, Smith, Vincent P, Arends, Felix P M, Cox, Helen S, Smith, Geoff, Archer, John A C

“…Mycobacterium tuberculosis complex (MTBC), the causative agent of tuberculosis (TB), is characterized by low sequence diversity making this bacterium one of…”
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Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences by Kalkatawi, Manal, Rangkuti, Farania, Schramm, Michael, Jankovic, Boris R., Kamau, Allan, Chowdhary, Rajesh, Archer, John A. C., Bajic, Vladimir B.

“…Motivation: Recognition of poly(A) signals in mRNA is relatively straightforward due to the presence of easily recognizable polyadenylic acid tail. However,…”
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Impact of fgd1 and ddn Diversity in Mycobacterium tuberculosis Complex on In Vitro Susceptibility to PA-824 by Feuerriegel, Silke, Köser, Claudio U, Baù, Davide, Rüsch-Gerdes, Sabine, Summers, David K, Archer, John A. C, Marti-Renom, Marc A, Niemann, Stefan

“…PA-824 is a promising drug candidate for the treatment of tuberculosis (TB). It is in phase II clinical trials as part of the first newly designed regimen…”
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Potential of Rhodococcus strains for biotechnological vanillin production from ferulic acid and eugenol by Plaggenborg, Rainer, Overhage, Jörg, Loos, Andrea, Archer, John A. C, Lessard, Philip, Sinskey, Anthony J, Steinbüchel, Alexander, Priefert, Horst

“…The potential of two Rhodococcus strains for biotechnological vanillin production from ferulic acid and eugenol was investigated. Genome sequence data of…”
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Core microbial functional activities in ocean environments revealed by global metagenomic profiling analyses by Ferreira, Ari J. S., Siam, Rania, Setubal, João C., Moustafa, Ahmed, Sayed, Ahmed, Chambergo, Felipe S., Dawe, Adam S., Ghazy, Mohamed A., Sharaf, Hazem, Ouf, Amged, Alam, Intikhab, Abdel-Haleem, Alyaa M., Lehvaslaiho, Heikki, Ramadan, Eman, Antunes, André Guimarães Lemos, Stingl, Ulrich, Archer, John A. C., Jankovic, Boris R., Sogin, Mitchell, Bajic, Vladimir B., El-Dorry, Hamza

“…Metagenomics-based functional profiling analysis is an effective means of gaining deeper insight into the composition of marine microbial populations and…”
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Read length and repeat resolution: exploring prokaryote genomes using next-generation sequencing technologies by Cahill, Matt J, Köser, Claudio U, Ross, Nicholas E, Archer, John A C

“…There are a growing number of next-generation sequencing technologies. At present, the most cost-effective options also produce the shortest reads. However,…”
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Polymorphisms in Isoniazid and Prothionamide Resistance Genes of the Mycobacterium tuberculosis Complex by Projahn, Michaela, Köser, Claudio U, Homolka, Susanne, Summers, David K, Archer, John A C, Niemann, Stefan

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Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea by Alzubaidy, Hanin, Essack, Magbubah, Malas, Tareq B., Bokhari, Ameerah, Motwalli, Olaa, Kamanu, Frederick Kinyua, Jamhor, Suhaiza Ahmad, Mokhtar, Noor Azlin, Antunes, André, Simões, Marta Filipa, Alam, Intikhab, Bougouffa, Salim, Lafi, Feras F., Bajic, Vladimir B., Archer, John A.C.

“…Mangroves are unique, and endangered, coastal ecosystems that play a vital role in the tropical and subtropical environments. A comprehensive description of…”
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Transcriptional Response of Rhodococcus aetherivorans I24 to Polychlorinated Biphenyl-Contaminated Sediments by Puglisi, Edoardo, Cahill, Matt J, Lessard, Philip A, Capri, Ettore, Sinskey, Anthony J, Archer, John A. C, Boccazzi, Paolo

“…We used a microarray targeting 3,524 genes to assess the transcriptional response of the actinomycete Rhodococcus aetherivorans I24 in minimal medium…”
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Thr270Ile in embC (Rv3793) is not a marker for ethambutol resistance in the Mycobacterium tuberculosis complex by Köser, Claudio U, Summers, David K, Archer, John A C

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Conotoxins that confer therapeutic possibilities by Essack, Magbubah, Bajic, Vladimir B, Archer, John A C

“…Cone snails produce a distinctive repertoire of venom peptides that are used both as a defense mechanism and also to facilitate the immobilization and…”
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Role of the Dihydrofolate Reductase DfrA (Rv2763c) in Trimethoprim-Sulfamethoxazole (Co-Trimoxazole) Resistance in Mycobacterium tuberculosis by KÖSER, Claudio U, SUMMERS, David K, ARCHER, John A. C, JACOBS, William R

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Simplified method for predicting a functional class of proteins in transcription factor complexes by Piatek, Marek J, Schramm, Michael C, Burra, Dharani D, Binshbreen, Abdulaziz, Jankovic, Boris R, Chowdhary, Rajesh, Archer, John A C, Bajic, Vladimir B

“…Initiation of transcription is essential for most of the cellular responses to environmental conditions and for cell and tissue specificity. This process is…”
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Metagenomics as a preliminary screen for antimicrobial bioprospecting by Al-Amoudi, Soha, Razali, Rozaimi, Essack, Magbubah, Amini, Mohammad Shoaib, Bougouffa, Salim, Archer, John A.C., Lafi, Feras F., Bajic, Vladimir B.

“…Since the composition of soil directs the diversity of the contained microbiome and its potential to produce bioactive compounds, many studies has been focused…”
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DAMPD: a manually curated antimicrobial peptide database by Seshadri Sundararajan, Vijayaraghava, Gabere, Musa Nur, Pretorius, Ashley, Adam, Saleem, Christoffels, Alan, Lehväslaiho, Minna, Archer, John A. C., Bajic, Vladimir B.

“…The demand for antimicrobial peptides (AMPs) is rising because of the increased occurrence of pathogens that are tolerant or resistant to conventional…”
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Bioprospecting Red Sea Coastal Ecosystems for Culturable Microorganisms and Their Antimicrobial Potential by Al-Amoudi, Soha, Essack, Magbubah, Simões, Marta F, Bougouffa, Salim, Soloviev, Irina, Archer, John A C, Lafi, Feras F, Bajic, Vladimir B

“…Microorganisms that inhabit unchartered unique soil such as in the highly saline and hot Red Sea lagoons on the Saudi Arabian coastline, represent untapped…”
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In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria by Motwalli, Olaa, Essack, Magbubah, Jankovic, Boris R, Ji, Boyang, Liu, Xinyao, Ansari, Hifzur Rahman, Hoehndorf, Robert, Gao, Xin, Arold, Stefan T, Mineta, Katsuhiko, Archer, John A C, Gojobori, Takashi, Mijakovic, Ivan, Bajic, Vladimir B

“…Finding a source from which high-energy-density biofuels can be derived at an industrial scale has become an urgent challenge for renewable energy production…”
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DESM: portal for microbial knowledge exploration systems by Salhi, Adil, Essack, Magbubah, Radovanovic, Aleksandar, Marchand, Benoit, Bougouffa, Salim, Antunes, Andre, Simoes, Marta Filipa, Lafi, Feras F, Motwalli, Olaa A, Bokhari, Ameerah, Malas, Tariq, Amoudi, Soha Al, Othum, Ghofran, Allam, Intikhab, Mineta, Katsuhiko, Gao, Xin, Hoehndorf, Robert, C Archer, John A, Gojobori, Takashi, Bajic, Vladimir B

“…Microorganisms produce an enormous variety of chemical compounds. It is of general interest for microbiology and biotechnology researchers to have means to…”
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