Search Results - "Butter, Falk"

A DNA methylation reader complex that enhances gene transcription by Harris, C Jake, Scheibe, Marion, Wongpalee, Somsakul Pop, Liu, Wanlu, Cornett, Evan M, Vaughan, Robert M, Li, Xueqin, Chen, Wei, Xue, Yan, Zhong, Zhenhui, Yen, Linda, Barshop, William D, Rayatpisheh, Shima, Gallego-Bartolome, Javier, Groth, Martin, Wang, Zonghua, Wohlschlegel, James A, Du, Jiamu, Rothbart, Scott B, Butter, Falk, Jacobsen, Steven E

“…DNA methylation generally functions as a repressive transcriptional signal, but it is also known to activate gene expression. In either case, the downstream…”
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Misactivation of multiple starvation responses in yeast by loss of tRNA modifications by Bruch, Alexander, Laguna, Teresa, Butter, Falk, Schaffrath, Raffael, Klassen, Roland

“…Abstract Previously, combined loss of different anticodon loop modifications was shown to impair the function of distinct tRNAs in Saccharomyces cerevisiae…”
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Proteotranscriptomics assisted gene annotation and spatial proteomics of Bombyx mori BmN4 cell line by Levin, Michal, Scheibe, Marion, Butter, Falk

“…The process of identifying all coding regions in a genome is crucial for any study at the level of molecular biology, ranging from single-gene cloning to…”
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Quantitative Proteomics to Identify Nuclear RNA-Binding Proteins of Malat1 by Scherer, Marian, Levin, Michal, Butter, Falk, Scheibe, Marion

“…The long non-coding RNA Malat1 has been implicated in several human cancers, while the mechanism of action is not completely understood. As RNAs in cells…”
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Class I HDAC overexpression promotes temozolomide resistance in glioma cells by regulating RAD18 expression by Hanisch, Daniela, Krumm, Andrea, Diehl, Tamara, Stork, Carla M., Dejung, Mario, Butter, Falk, Kim, Ella, Brenner, Walburgis, Fritz, Gerhard, Hofmann, Thomas G., Roos, Wynand P.

“…Overexpression of histone deacetylases (HDACs) in cancer commonly causes resistance to genotoxic-based therapies. Here, we report on the novel mechanism…”
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The RNA fold interactome of evolutionary conserved RNA structures in S. cerevisiae by Casas-Vila, Nuria, Sayols, Sergi, Pérez-Martínez, Lara, Scheibe, Marion, Butter, Falk

“…RNA-binding proteins play key roles in regulation of gene expression via recognition of structural features in RNA molecules. Here we apply a quantitative RNA…”
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The nuclear proteome of Trypanosoma brucei by Goos, Carina, Dejung, Mario, Janzen, Christian J, Butter, Falk, Kramer, Susanne

“…Trypanosoma brucei is a protozoan flagellate that is transmitted by tsetse flies into the mammalian bloodstream. The parasite has a huge impact on human health…”
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A novel SNF2 ATPase complex in Trypanosoma brucei with a role in H2A.Z-mediated chromatin remodelling by Vellmer, Tim, Hartleb, Laura, Fradera Sola, Albert, Kramer, Susanne, Meyer-Natus, Elisabeth, Butter, Falk, Janzen, Christian J

“…A cascade of histone acetylation events with subsequent incorporation of a histone H2A variant plays an essential part in transcription regulation in various…”
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The developmental proteome of Drosophila melanogaster by Casas-Vila, Nuria, Bluhm, Alina, Sayols, Sergi, Dinges, Nadja, Dejung, Mario, Altenhein, Tina, Kappei, Dennis, Altenhein, Benjamin, Roignant, Jean-Yves, Butter, Falk

“…is a widely used genetic model organism in developmental biology. While this model organism has been intensively studied at the RNA level, a comprehensive…”
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Proteotranscriptomics – A facilitator in omics research by Levin, Michal, Butter, Falk

“…Applications in omics research, such as comparative transcriptomics and proteomics, require the knowledge of the species-specific gene sequence and benefit…”
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Correction to: Proteotranscriptomics assisted gene annotation and spatial proteomics of Bombyx mori BmN4 cell line by Levin, Michal, Scheibe, Marion, Butter, Falk

“…An amendment to this paper has been published and can be accessed via the original article…”
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The double-stranded DNA-binding proteins TEBP-1 and TEBP-2 form a telomeric complex with POT-1 by Dietz, Sabrina, Almeida, Miguel Vasconcelos, Nischwitz, Emily, Schreier, Jan, Viceconte, Nikenza, Fradera-Sola, Albert, Renz, Christian, Ceron-Noriega, Alejandro, Ulrich, Helle D., Kappei, Dennis, Ketting, René F., Butter, Falk

“…Telomeres are bound by dedicated proteins, which protect them from DNA damage and regulate telomere length homeostasis. In the nematode Caenorhabditis elegans…”
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Quantifying post-transcriptional regulation in the development of Drosophila melanogaster by Becker, Kolja, Bluhm, Alina, Casas-Vila, Nuria, Dinges, Nadja, Dejung, Mario, Sayols, Sergi, Kreutz, Clemens, Roignant, Jean-Yves, Butter, Falk, Legewie, Stefan

“…Even though proteins are produced from mRNA, the correlation between mRNA levels and protein abundances is moderate in most studies, occasionally attributed to…”
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The nucleolar DExD/H protein Hel66 is involved in ribosome biogenesis in Trypanosoma brucei by Bakari-Soale, Majeed, Ikenga, Nonso Josephat, Scheibe, Marion, Butter, Falk, Jones, Nicola G., Kramer, Susanne, Engstler, Markus

“…The biosynthesis of ribosomes is a complex cellular process involving ribosomal RNA, ribosomal proteins and several further trans-acting factors. DExD/H box…”
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Quantitative interaction screen of telomeric repeat-containing RNA reveals novel TERRA regulators by Scheibe, Marion, Arnoult, Nausica, Kappei, Dennis, Buchholz, Frank, Decottignies, Anabelle, Butter, Falk, Mann, Matthias

“…Telomeres are actively transcribed into telomeric repeat-containing RNA (TERRA), which has been implicated in the regulation of telomere length and…”
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TNF receptor 1 genetic risk mirrors outcome of anti-TNF therapy in multiple sclerosis by Gregory, Adam P., Dendrou, Calliope A., Attfield, Kathrine E., Haghikia, Aiden, Xifara, Dionysia K., Butter, Falk, Poschmann, Gereon, Kaur, Gurman, Lambert, Lydia, Leach, Oliver A., Prömel, Simone, Punwani, Divya, Felce, James H., Davis, Simon J., Gold, Ralf, Nielsen, Finn C., Siegel, Richard M., Mann, Matthias, Bell, John I., McVean, Gil, Fugger, Lars

“…Genome-wide association studies in combination with functional analyses identify a genetic variant that explains why anti-tumour necrosis factor therapy, used…”
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Revealing the Arabidopsis AtGRP7 mRNA binding proteome by specific enhanced RNA interactome capture by Reichel, Marlene, Schmidt, Olga, Rettel, Mandy, Stein, Frank, Köster, Tino, Butter, Falk, Staiger, Dorothee

“…The interaction of proteins with RNA in the cell is crucial to orchestrate all steps of RNA processing. RNA interactome capture (RIC) techniques have been…”
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Unbiased screening identifies regulators of cell-cell adhesion and treatment options in pemphigus by Franz, Henriette, Rathod, Maitreyi, Zimmermann, Aude, Stüdle, Chiara, Beyersdorfer, Vivien, Leal-Fischer, Karen, Hanns, Pauline, Cunha, Tomás, Didona, Dario, Hertl, Michael, Scheibe, Marion, Butter, Falk, Schmidt, Enno, Spindler, Volker

“…Cell-cell junctions, and specifically desmosomes, are crucial for robust intercellular adhesion. Desmosomal function is compromised in the autoimmune…”
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Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition by Despic, Vladimir, Dejung, Mario, Gu, Mengting, Krishnan, Jayanth, Zhang, Jing, Herzel, Lydia, Straube, Korinna, Gerstein, Mark B, Butter, Falk, Neugebauer, Karla M

“…During the maternal-to-zygotic transition (MZT), transcriptionally silent embryos rely on post-transcriptional regulation of maternal mRNAs until zygotic…”
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Quantitative Proteomics Uncovers Novel Factors Involved in Developmental Differentiation of Trypanosoma brucei by Dejung, Mario, Subota, Ines, Bucerius, Ferdinand, Dindar, Gülcin, Freiwald, Anja, Engstler, Markus, Boshart, Michael, Butter, Falk, Janzen, Christian J

“…Developmental differentiation is a universal biological process that allows cells to adapt to different environments to perform specific functions. African…”
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