Search Results - "Buels, Robert M"

JBrowse 2: a modular genome browser with views of synteny and structural variation by Diesh, Colin, Stevens, Garrett J, Xie, Peter, De Jesus Martinez, Teresa, Hershberg, Elliot A, Leung, Angel, Guo, Emma, Dider, Shihab, Zhang, Junjun, Bridge, Caroline, Hogue, Gregory, Duncan, Andrew, Morgan, Matthew, Flores, Tia, Bimber, Benjamin N, Haw, Robin, Cain, Scott, Buels, Robert M, Stein, Lincoln D, Holmes, Ian H

“…We present JBrowse 2, a general-purpose genome annotation browser offering enhanced visualization of complex structural variation and evolutionary…”
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Web Apollo: a web-based genomic annotation editing platform by Lee, Eduardo, Helt, Gregg A, Reese, Justin T, Munoz-Torres, Monica C, Childers, Chris P, Buels, Robert M, Stein, Lincoln, Holmes, Ian H, Elsik, Christine G, Lewis, Suzanna E

“…Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current…”
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solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database by Tecle, Isaak Y, Menda, Naama, Buels, Robert M, van der Knaap, Esther, Mueller, Lukas A

“…A common approach to understanding the genetic basis of complex traits is through identification of associated quantitative trait loci (QTL). Fine mapping QTLs…”
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The SGN comparative map viewer by Mueller, Lukas A., Mills, Adri A., Skwarecki, Beth, Buels, Robert M., Menda, Naama, Tanksley, Steven D.

“…Motivation: With the rapid accumulation of genetic data for a multitude of different species, the availability of intuitive comparative genomic tools becomes…”
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Sol Genomics Network (solgenomics.net): growing tomatoes using Perl by Bombarely, Aureliano, Menda, Naama, Tecle, Isaak Y, Buels, Robert M, Strickler, Susan, Fischer-York, Thomas, Pujar, Anuradha, Leto, Jonathan, Gosselin, Joseph, Mueller, Lukas A

“…The Sol Genomics Network (SGN; http://solgenomics.net/) is a clade-oriented database (COD) containing biological data for species in the Solanaceae and their…”
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JBrowse Jupyter: a Python interface to JBrowse 2 by De Jesus Martinez, Teresa, Hershberg, Elliot A, Guo, Emma, Stevens, Garrett J, Diesh, Colin, Xie, Peter, Bridge, Caroline, Cain, Scott, Haw, Robin, Buels, Robert M, Stein, Lincoln D, Holmes, Ian H

“…Abstract Motivation JBrowse Jupyter is a package that aims to close the gap between Python programming and genomic visualization. Web-based genome browsers are…”
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A Community-Based Annotation Framework for Linking Solanaceae Genomes with Phenomes by Menda, Naama, Buels, Robert M., Tecle, Isaak, Mueller, Lukas A.

“…The amount of biological data available in the public domain is growing exponentially, and there is an increasing need for infrastructural and human resources…”
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A Community-Based Annotation Framework for Linking Solanaceae Genomes with Phenomes1[C][OA] by Menda, Naama, Buels, Robert M, Tecle, Isaak, Mueller, Lukas A

“…The amount of biological data available in the public domain is growing exponentially, and there is an increasing need for infrastructural and human resources…”
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The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data by Jung, Sook, Menda, Naama, Redmond, Seth, Buels, Robert M, Friesen, Maren, Bendana, Yuri, Sanderson, Lacey-Anne, Lapp, Hilmar, Lee, Taein, MacCallum, Bob, Bett, Kirstin E, Cain, Scott, Clements, Dave, Mueller, Lukas A, Main, Dorrie

“…Linking phenotypic with genotypic diversity has become a major requirement for basic and applied genome-centric biological research. To meet this need, a…”
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SimSnap: fast-forwarding via native execution and application-level checkpointing by Szwed, P.K., Marques, D., Buels, R.M., McKee, S.A., Schulz, M.

“…As systems become more complex, conducting cycle-accurate simulation experiments becomes more time consuming. Most approaches to accelerating simulations…”
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