Search Results - "Budak, Hikmet"

CRISPR/Cas: a Nobel Prize award-winning precise genome editing technology for gene therapy and crop improvement by Li, Chao, Brant, Eleanor, Budak, Hikmet, Zhang, Baohong

“…Since it was first recognized in bacteria and archaea as a mechanism for innate viral immunity in the early 2010s, clustered regularly interspaced short…”
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Trends in aptamer selection methods and applications by Yüce, Meral, Ullah, Naimat, Budak, Hikmet

“…Aptamers are target specific ssDNA, RNA or peptide sequences generated by an in vitro selection and amplification method called SELEX (Systematic Evolution of…”
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Efficient genome editing in wheat using Cas9 and Cpf1 (AsCpf1 and LbCpf1) nucleases by Kim, Dongjin, Hager, Megan, Brant, Eleanor, Budak, Hikmet

“…Genome editing can be used to create new wheat varieties with enhanced performance. Clustered regularly interspaced short palindromic repeat (CRISPR) is a…”
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Plant Small Non-coding RNAs and Their Roles in Biotic Stresses by Brant, Eleanor J, Budak, Hikmet

“…Non-coding RNAs (ncRNAs) have emerged as critical components of gene regulatory networks across a plethora of plant species. In particular, the 20-30…”
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RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats by Cagirici, Halise Busra, Alptekin, Burcu, Budak, Hikmet

“…There is an urgent need for the improvement of drought-tolerant bread and durum wheat. The huge and complex genome of bread wheat (BBAADD genome) stands as a…”
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Dual-excitation upconverting nanoparticle and quantum dot aptasensor for multiplexed food pathogen detection by Kurt, Hasan, Yüce, Meral, Hussain, Babar, Budak, Hikmet

“…In this report, a dual-excitation sensing method was developed using aptamer-functionalized quantum dots and upconverting nanoparticles, exhibiting Stokes and…”
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Genome-wide discovery of G-quadruplexes in barley by Cagirici, H. Busra, Budak, Hikmet, Sen, Taner Z.

“…G-quadruplexes (G4s) are four-stranded nucleic acid structures with closely spaced guanine bases forming square planar G-quartets. Aberrant formation of G4…”
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Mapping QTLs conferring salt tolerance and micronutrient concentrations at seedling stage in wheat by Hussain, Babar, Lucas, Stuart James, Ozturk, Levent, Budak, Hikmet

“…Soil salinization and degradation is one of the consequences of climate change. Identification of major salt tolerance genes and marker assisted selection…”
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miRNA expression patterns of Triticum dicoccoides in response to shock drought stress by Kantar, Melda, Lucas, Stuart J, Budak, Hikmet

“…Drought is a major environmental stress factor that affects plant growth and development worldwide. Wild emmer wheat (Triticum turgidum ssp. dicoccoides), the…”
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Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress by Akpinar, Bala Ani, Kantar, Melda, Budak, Hikmet

“…MicroRNAs, small regulatory molecules with significant impacts on the transcriptional network of all living organisms, have been the focus of several studies…”
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Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species by Ullah, Naimat, Yüce, Meral, Neslihan Öztürk Gökçe, Z, Budak, Hikmet

“…Drought is a lifestyle disease. Plant metabolomics has been exercised for understanding the fine-tuning of the potential pathways to surmount the adverse…”
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Drought Tolerance in Modern and Wild Wheat by Budak, Hikmet, Yucebilgili Kurtoglu, Kuaybe, Kantar, Melda

“…The genus Triticum includes bread (Triticum aestivum) and durum wheat (Triticum durum) and constitutes a major source for human food consumption. Drought is…”
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Regulatory non-coding RNAs: a new frontier in regulation of plant biology by Bhogireddy, Sailaja, Mangrauthia, Satendra K., Kumar, Rakesh, Pandey, Arun K., Singh, Sadhana, Jain, Ankit, Budak, Hikmet, Varshney, Rajeev K., Kudapa, Himabindu

“…Beyond the most crucial roles of RNA molecules as a messenger, ribosomal, and transfer RNAs, the regulatory role of many non-coding RNAs (ncRNAs) in plant…”
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Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure by Gordon, Sean P., Contreras-Moreira, Bruno, Woods, Daniel P., Des Marais, David L., Burgess, Diane, Shu, Shengqiang, Stritt, Christoph, Roulin, Anne C., Schackwitz, Wendy, Tyler, Ludmila, Martin, Joel, Lipzen, Anna, Dochy, Niklas, Phillips, Jeremy, Barry, Kerrie, Geuten, Koen, Budak, Hikmet, Juenger, Thomas E., Amasino, Richard, Caicedo, Ana L., Goodstein, David, Davidson, Patrick, Mur, Luis A. J., Figueroa, Melania, Freeling, Michael, Catalan, Pilar, Vogel, John P.

“…While prokaryotic pan-genomes have been shown to contain many more genes than any individual organism, the prevalence and functional significance of…”
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G4Boost: a machine learning-based tool for quadruplex identification and stability prediction by Cagirici, H. Busra, Budak, Hikmet, Sen, Taner Z

“…Abstract Background G-quadruplexes (G4s), formed within guanine-rich nucleic acids, are secondary structures involved in important biological processes…”
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Author Correction: Mapping QTLs conferring salt tolerance and micronutrient concentrations at seedling stage in wheat by Hussain, Babar, Lucas, Stuart James, Ozturk, Levent, Budak, Hikmet

“…An amendment to this paper has been published and can be accessed via a link at the top of the paper…”
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Effect of phyB and phyC loss-of-function mutations on the wheat transcriptome under short and long day photoperiods by Kippes, Nestor, VanGessel, Carl, Hamilton, James, Akpinar, Ani, Budak, Hikmet, Dubcovsky, Jorge, Pearce, Stephen

“…Photoperiod signals provide important cues by which plants regulate their growth and development in response to predictable seasonal changes. Phytochromes, a…”
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Insights on decoding wheat and barley genomes by Budak, Hikmet, Appels, Rudi, Paux, Etienne

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Long Non-coding RNA in Plants in the Era of Reference Sequences by Budak, Hikmet, Kaya, Sezgi Biyiklioglu, Cagirici, Halise Busra

“…The discovery of non-coding RNAs (ncRNAs), and the subsequent elucidation of their functional roles, was largely delayed due to the misidentification of…”
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LncMachine: a machine learning algorithm for long noncoding RNA annotation in plants by Cagirici, H. Busra, Galvez, S., Sen, Taner Z., Budak, Hikmet

“…Following the elucidation of the critical roles they play in numerous important biological processes, long noncoding RNAs (lncRNAs) have gained vast attention…”
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