Search Results - "Brum, Jennifer R"

Rising to the challenge: accelerated pace of discovery transforms marine virology by Brum, Jennifer R., Sullivan, Matthew B.

“…Key Points A newly available quantitative metagenomic pipeline for double-stranded DNA (dsDNA) viruses has facilitated the generation of large-scale,…”
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Seasonal time bombs: dominant temperate viruses affect Southern Ocean microbial dynamics by Brum, Jennifer R, Hurwitz, Bonnie L, Schofield, Oscar, Ducklow, Hugh W, Sullivan, Matthew B

“…Rapid warming in the highly productive western Antarctic Peninsula (WAP) region of the Southern Ocean has affected multiple trophic levels, yet viral…”
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Depth-stratified functional and taxonomic niche specialization in the ‘core’ and ‘flexible’ Pacific Ocean Virome by Hurwitz, Bonnie L, Brum, Jennifer R, Sullivan, Matthew B

“…Microbes drive myriad ecosystem processes, and their viruses modulate microbial-driven processes through mortality, horizontal gene transfer, and metabolic…”
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Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses by Roux, Simon, Brum, Jennifer R., Dutilh, Bas E., Sunagawa, Shinichi, Duhaime, Melissa B., Loy, Alexander, Poulos, Bonnie T., Solonenko, Natalie, Lara, Elena, Poulain, Julie, Pesant, Stéphane, Kandels-Lewis, Stefanie, Dimier, Céline, Picheral, Marc, Searson, Sarah, Cruaud, Corinne, Alberti, Adriana, Duarte, Carlos M., Gasol, Josep M., Vaqué, Dolors, Bork, Peer, Acinas, Silvia G., Wincker, Patrick, Sullivan, Matthew B.

“…The assembly and analysis of complete genomes and large genomic fragments have tripled the number of known ocean viruses and uncovered the potentially…”
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Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses by Brum, Jennifer R, Schenck, Ryan O, Sullivan, Matthew B

“…Viruses influence oceanic ecosystems by causing mortality of microorganisms, altering nutrient and organic matter flux via lysis and auxiliary metabolic gene…”
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Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses by Hurwitz, Bonnie L., Westveld, Anton H., Brum, Jennifer R., Sullivan, Matthew B.

“…Long-standing questions in marine viral ecology are centered on understanding how viral assemblages change along gradients in space and time. However,…”
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Host-linked soil viral ecology along a permafrost thaw gradient by Emerson, Joanne B., Roux, Simon, Brum, Jennifer R., Bolduc, Benjamin, Woodcroft, Ben J., Jang, Ho Bin, Singleton, Caitlin M., Solden, Lindsey M., Naas, Adrian E., Boyd, Joel A., Hodgkins, Suzanne B., Wilson, Rachel M., Trubl, Gareth, Li, Changsheng, Frolking, Steve, Pope, Phillip B., Wrighton, Kelly C., Crill, Patrick M., Chanton, Jeffrey P., Saleska, Scott R., Tyson, Gene W., Rich, Virginia I., Sullivan, Matthew B.

“…Climate change threatens to release abundant carbon that is sequestered at high latitudes, but the constraints on microbial metabolisms that mediate the…”
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Microbial Ecology of Oxygen Minimum Zones Amidst Ocean Deoxygenation by Long, Andrew M, Jurgensen, Sophie K, Petchel, Ariel R, Savoie, Emily R, Brum, Jennifer R

“…Oxygen minimum zones (OMZs) have substantial effects on the global ecology and biogeochemical processes of marine microbes. However, the diversity and activity…”
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Illuminating structural proteins in viral “dark matter” with metaproteomics by Brum, Jennifer R., Ignacio-Espinoza, J. Cesar, Kim, Eun-Hae, Trubl, Gareth, Jones, Robert M., Roux, Simon, VerBerkmoes, Nathan C., Rich, Virginia I., Sullivan, Matthew B.

“…Viruses are ecologically important, yet environmental virology is limited by dominance of unannotated genomic sequences representing taxonomic and functional…”
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Show and tell: approaches for effective figures by Midway, Stephen R., Brum, Jennifer R., Robertson, Matthew

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Putative archaeal viruses from the mesopelagic ocean by Vik, Dean R, Roux, Simon, Brum, Jennifer R, Bolduc, Ben, Emerson, Joanne B, Padilla, Cory C, Stewart, Frank J, Sullivan, Matthew B

“…Oceanic viruses that infect bacteria, or phages, are known to modulate host diversity, metabolisms, and biogeochemical cycling, while the viruses that infect…”
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Assembly of a marine viral metagenome after physical fractionation by Brum, Jennifer R, Culley, Alexander I, Steward, Grieg F

“…Metagenomic analyses of marine viruses generate an overview of viral genes present in a sample, but the percentage of the resulting sequence fragments that can…”
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Counting dots or counting reads? Complementary approaches to estimate virus-to-microbe ratios by Roux, Simon, Brum, Jennifer R.

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Seasonal and Interannual Variability in Sources of Nitrogen Supporting Export in the Oligotrophic Subtropical North Pacific Ocean by Dore, John E., Brum, Jennifer R., Tupas, Luis M., Karl, David M.

“…Over timescales of months to years, the export of organic nitrogen from the oceanic euphotic zone (principally as sinking particulate nitrogen, PN) is believed…”
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Lysis, lysogeny and virus–microbe ratios by Weitz, Joshua S., Beckett, Stephen J., Brum, Jennifer R., Cael, B. B., Dushoff, Jonathan

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Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state by Jurgensen, Sophie K., Roux, Simon, Schwenck, Sarah M., Stewart, Frank J., Sullivan, Matthew B., Brum, Jennifer R.

“…Microbial communities in oxygen minimum zones (OMZs) are known to have significant impacts on global biogeochemical cycles, but viral influence on microbial…”
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A viral reckoning: viruses emerge as essential manipulators of global ecosystems by Roux, Simon, Brum, Jennifer R.

“…The purpose of this expedition was to monitor how the massive influx of freshwater coming from significant melting of the Antarctic ice sheet influenced…”
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Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems by Richter, Daniel J, Watteaux, Romain, Vannier, Thomas, Leconte, Jade, Frémont, Paul, Reygondeau, Gabriel, Maillet, Nicolas, Henry, Nicolas, Benoit, Gaëtan, Da Silva, Ophélie, Delmont, Tom O, Fernàndez-Guerra, Antonio, Suweis, Samir, Narci, Romain, Berney, Cédric, Eveillard, Damien, Gavory, Frederick, Guidi, Lionel, Labadie, Karine, Mahieu, Eric, Poulain, Julie, Romac, Sarah, Roux, Simon, Dimier, Céline, Kandels, Stefanie, Picheral, Marc, Searson, Sarah, Pesant, Stéphane, Aury, Jean-Marc, Brum, Jennifer R, Lemaitre, Claire, Pelletier, Eric, Bork, Peer, Sunagawa, Shinichi, Lombard, Fabien, Karp-Boss, Lee, Bowler, Chris, Sullivan, Matthew B, Karsenti, Eric, Mariadassou, Mahendra, Probert, Ian, Peterlongo, Pierre, Wincker, Patrick, de Vargas, Colomban, Ribera d'Alcalà, Maurizio, Iudicone, Daniele, Jaillon, Olivier

“…Biogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale…”
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Plankton networks driving carbon export in the oligotrophic ocean by Guidi, Lionel, Chaffron, Samuel, Bittner, Lucie, Eveillard, Damien, Larhlimi, Abdelhalim, Roux, Simon, Darzi, Youssef, Audic, Stephane, Berline, Léo, Brum, Jennifer R., Coelho, Luis Pedro, Espinoza, Julio Cesar Ignacio, Malviya, Shruti, Sunagawa, Shinichi, Dimier, Céline, Kandels-Lewis, Stefanie, Picheral, Marc, Poulain, Julie, Searson, Sarah, Stemmann, Lars, Not, Fabrice, Hingamp, Pascal, Speich, Sabrina, Follows, Mick, Karp-Boss, Lee, Boss, Emmanuel, Ogata, Hiroyuki, Pesant, Stephane, Weissenbach, Jean, Wincker, Patrick, Acinas, Silvia G., Bork, Peer, de Vargas, Colomban, Iudicone, Daniele, Sullivan, Matthew B., Raes, Jeroen, Karsenti, Eric, Bowler, Chris, Gorsky, Gabriel

“…The biological carbon pump is the process by which CO 2 is transformed to organic carbon via photosynthesis, exported through sinking particles, and finally…”
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An inexpensive, accurate, and precise wet-mount method for enumerating aquatic viruses by Cunningham, Brady R, Brum, Jennifer R, Schwenck, Sarah M, Sullivan, Matthew B, John, Seth G

“…Viruses affect biogeochemical cycling, microbial mortality, gene flow, and metabolic functions in diverse environments through infection and lysis of…”
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