Search Results - "Brown, Randall H."

Model-based transcriptome engineering promotes a fermentative transcriptional state in yeast by Michael, Drew G., Maier, Ezekiel J., Brown, Holly, Gish, Stacey R., Fiore, Christopher, Brown, Randall H., Brent, Michael R.

“…The ability to rationally manipulate the transcriptional states of cells would be of great use in medicine and bioengineering. We have developed an algorithm,…”
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Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner by Lu, David V., Brown, Randall H., Arumugam, Manimozhiyan, Brent, Michael R.

“…Motivation: The most accurate way to determine the intron–exon structures in a genome is to align spliced cDNA sequences to the genome. Thus, cDNA-to-genome…”
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Begin at the beginning: predicting genes with 5' UTRs by Brown, Randall H, Gross, Samuel S, Brent, Michael R

“…The retrainable, comparative gene predictor N-SCAN integrates multigenome modeling and 5' untranslated region (5' UTR) modeling. In this article, we evaluate…”
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Gene prediction and verification in a compact genome with numerous small introns by Tenney, Aaron E, Brown, Randall H, Vaske, Charles, Lodge, Jennifer K, Doering, Tamara L, Brent, Michael R

“…The genomes of clusters of related eukaryotes are now being sequenced at an increasing rate, creating a need for accurate, low-cost annotation of exon-intron…”
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Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment by Bajic, Vladimir B, Brent, Michael R, Brown, Randall H, Frankish, Adam, Harrow, Jennifer, Ohler, Uwe, Solovyev, Victor V, Tan, Sin Lam

“…This study analyzes the predictions of a number of promoter predictors on the ENCODE regions of the human genome as part of the ENCODE Genome Annotation…”
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Critical evaluation of low-order moment expansions for the bonding energy of lattices and defects by BROWN, R. H, CARLSSON, A. E

“…An exact evaluation of the cohesive energy E sub coh in a large number of model defect and bulk systems is used to assess the accuracy of truncated moment…”
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Pairagon+N-SCAN_EST: a model-based gene annotation pipeline by Arumugam, Manimozhiyan, Wei, Chaochun, Brown, Randall H, Brent, Michael R

“…This paper describes Pairagon+N-SCAN_EST, a gene annotation pipeline that uses only native alignments. For each expressed sequence it chooses the best genomic…”
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Calculation of the electronic properties of Ni-P amorphous alloys by HYUNGJIN YANG, SWIHART, J. C, NICHOLSON, D. M, BROWN, R. H

“…The atomic structure of Ni--P amorphous alloys were simulated for several concentrations (Ni sub 75 P sub 25 , Ni sub 80 P sub 20 , and Ni sub 85 P sub 15 ),…”
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