Search Results - "Broude, Natalia E"

Ab initio RNA folding by discrete molecular dynamics: from structure prediction to folding mechanisms by Ding, Feng, Sharma, Shantanu, Chalasani, Poornima, Demidov, Vadim V, Broude, Natalia E, Dokholyan, Nikolay V

“…RNA molecules with novel functions have revived interest in the accurate prediction of RNA three-dimensional (3D) structure and folding dynamics. However,…”
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Analysis of RNA localization and metabolism in single live bacterial cells: achievements and challenges by Broude, Natalia E.

“…Summary Studies of gene expression at the single cell level in live bacterial cells represent a new and fertile area of research providing real‐time, spatially…”
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RNA visualization in live bacterial cells using fluorescent protein complementation by Broude, Natalia E, Valencia-Burton, Maria, McCullough, Ron M, Cantor, Charles R

“…We describe a technique for the detection and localization of RNA transcripts in living cells. The method is based on fluorescent-protein complementation…”
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Labeling native bacterial RNA in live cells by Toran, Paul, Smolina, Irina, Driscoll, Harry, Ding, Feng, Sun, Yingjie, Cantor, Charles R, Broude, Natalia E

“…Labeling RNA molecules in their physiological environment is still a technological challenge that should be overcome to study kinetics, localization and…”
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Ultrasensitive detection of DNA and protein markers in cancer cells by Smolina, Irina V, Broude, Natalia E

“…Cancer cells differ from normal cells in various parameters, and these differences are caused by genomic mutations and consequential altered gene expression…”
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Spatiotemporal patterns and transcription kinetics of induced RNA in single bacterial cells by Valencia-Burton, Maria, Shah, Ankita, Sutin, Jason, Borogovac, Azra, McCullough, Ron M, Cantor, Charles R, Meller, Amit, Broude, Natalia E

“…Bacteria have a complex internal organization with specific localization of many proteins and DNA, which dynamically move during the cell cycle and in response…”
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GC/AT-Content Spikes as Genomic Punctuation Marks by Zhang, Lingang, Kasif, Simon, Cantor, Charles R., Broude, Natalia E.

“…Large-scale analysis of the GC-content distribution at the gene level reveals both common features and basic differences in genomes of different groups of…”
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Fast Complementation of Split Fluorescent Protein Triggered by DNA Hybridization by Demidov, Vadim V., Dokholyan, Nikolay V., Witte-Hoffmann, Carlos, Chalasani, Poornima, Yiu, Hung-Wei, Ding, Feng, Yu, Yong, Cantor, Charles R., Broude, Natalia E.

“…Fluorescent proteins have proven to be excellent reporters and biochemical sensors with a wide range of applications. In a split form, they are not…”
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RNA Detection in Live Bacterial Cells Using Fluorescent Protein Complementation Triggered by Interaction of Two RNA Aptamers with Two RNA-Binding Peptides by Yiu, Hung-Wei, Demidov, Vadim V., Toran, Paul, Cantor, Charles R., Broude, Natalia E.

“…Many genetic and infectious diseases can be targeted at the RNA level as RNA is more accessible than DNA. We seek to develop new approaches for detection and…”
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Probing the Genetic Population Structure of Trypanosoma cruzi with Polymorphic Microsatellites by Oliveira, Riva P., Broude, Natalia E., Macedo, Andrea M., Cantor, Charles R., Smith, Cassandra L., Sergio D. J. Pena

“…We describe here the identification of eight polymorphic microsatellite loci with (CA)nrepeats in the Trypanosoma cruzi genome based on the affinity capture of…”
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Stem-loop oligonucleotides: a robust tool for molecular biology and biotechnology by Broude, Natalia E

“…The specific structural features of stem-loop (hairpin) DNA constructs provide increased specificity of target recognition. Recently, several robust assays…”
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Multiplex Allele-Specific Target Amplification Based on PCR Suppression by Broude, Natalia E., Zhang, Lingang, Woodward, Karen, Englert, David, Cantor, Charles R.

“…We have developed a strategy for multiplex PCR based on PCR suppression. PCR suppression allows DNA target amplification with only one sequence-specific primer…”
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Visualization of induced RNA in single bacterial cells by Borogovac, Azra, Broude, Natalia E

“…Visualization of RNA in live cells is a challenging task due to the transient character of most RNA molecules and the lack of adequate methods to label RNA…”
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Enhanced DNA Sequencing by Hybridization by BROUDE, N. E, SANO, T, SMITH, C. L, CANTOR, C. R

“…An enhanced version of DNA sequencing by hybridization (SBH), termed positional SBH (PSBH), has been developed. PSBH uses duplex probes containing…”
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Differential Display of Genome Subsets Containing Specific Interspersed Repeats by Broude, Natalia E., Chandra, Abha, Smith, Cassandra L.

“…A genomic differential display method was developed that analyzes many restriction fragment length polymorphisms simultaneously. Interspersed repeat sequences…”
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Profluorescent protein fragments for fast bimolecular fluorescence complementation in vitro by Demidov, Vadim V, Broude, Natalia E

“…Here, we present a protocol for isolating the large N-terminal fragment of enhanced green fluorescent protein (EGFP) with a preformed chromophore. By itself,…”
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Trouble with differential display by Broude, Natalia E.

“…[...]a chapter on the microSAGE (serial analysis of gene expression) technique describes a modification from the original SAGE procedure adapted for gene…”
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Differential display in the time of microarrays by Broude, Natalia E

“…A brief overview of major methods used for genome-wide expression profiling is presented. Special attention is devoted to ordered differential display,…”
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Real-time monitoring of branched rolling-circle DNA amplification with peptide nucleic acid beacon by Smolina, Irina V., Demidov, Vadim V., Cantor, Charles R., Broude, Natalia E.

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A cancer roadmap by Broude, Natalia E

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