Search Results - "Brockman, F.J"

Visualization and modeling of the colonization dynamics of a bioluminescent bacterium in variably saturated, translucent quartz sand by Rockhold, M.L., Yarwood, R.R., Niemet, M.R., Bottomley, P.J., Brockman, F.J., Selker, J.S.

“…An experimental and numerical investigation was conducted to study the colonization dynamics of a bioluminescent bacterium, Pseudomonas fluorescens HK44,…”
Get full text

Phylogenetic Diversity of Archaea and Bacteria in a Deep Subsurface Paleosol by D. P. Chandler, F. J. Brockman, Bailey, T. J., Fredrickson, J. K.

“…A low-biomass paleosol 188 m below the ground surface at the Department of Energy's Hanford Site in south-central Washington State was recovered and maintained…”
Get full text

Geomicrobiology of high-level nuclear waste-contaminated vadose sediments at the Hanford Site, Washington State by Fredrickson, J.K, Zachara, J.M, Balkwill, D.L, Kennedy, D, Li, S.M.W, Kostandarithes, H.M, Daly, M.J, Romine, M.F, Brockman, F.J

“…Sediments from a high-level nuclear waste plume were collected as part of investigations to evaluate the potential fate and migration of contaminants in the…”
Get full text

Global transcriptomics analysis of the Desulfovibrio vulgaris change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism by PLUGGE, Caroline M, SCHOLTEN, Johannes C. M, CULLEY, David E, LEI NIE, BROCKMAN, Fred J, WEIWEN ZHANG

“…Desulfovibrio vulgaris is a metabolically flexible micro-organism. It can use sulfate as an electron acceptor to catabolize a variety of substrates, or in the…”
Get full text

Effect of Starvation on Induction of Quinoline Degradation for a Subsurface Bacterium in a Continuous-Flow Column by TRUEX, M. J, BROCKMAN, F. J, JOHNSTONE, D. L, FREDRICKSON, J. K

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
Get full text

DNA microarray analysis of anaerobic Methanosarcina barkeri reveals responses to heat shock and air exposure by Zhang, W, Culley, D.E, Nie, L, Brockman, F.J

“…Methanosarcina barkeri is a methanogenic archaeon that can digest cellulose and other polysaccharides to produce methane. It can only grow under strictly…”
Get full text

Effect of PCR template and concentration on the composition and distribution of total community 16S rDNA clone libraries by Chandler, D.P, Fredrickson, J.K, Brockman, F.J

“…Total DNA from sediment samples was isolated by a direct lysis technique. Purified DNA was used as template either undiluted or diluted 1 : 10 prior to…”
Get full text

Isolation and characterization of RNA from low-biomass deep-subsurface sediments by Orgram, A. (Washington State University, Pullman, WA.), Sun, W, Brockman, F.J, Frederickson, J.K

“…Three methods for the isolation of microbial RNA from low-biomass deep-subsurface sediments have been developed and evaluated. RNA was isolated from samples…”
Get full text

Estimating biodegradative gene numbers at a JP-5 contaminated site using PCR by Chandler, D P, Brockman, F J

“…We have utilized a most-probable-number polymerase chain reaction (MPN-PCR) procedure to estimate gene numbers and biodegradative potential at a jet fuel…”
Get full text

Microbiological comparisons within and across contiguous lacustrine, paleosol, and fluvial subsurface sediments by Kieft, T.L. (New Mexico Institute of Mining and Technology, Socorro, NM.), Fredrickson, J.K, McKinley, J.P, Bjornstad, B.N, Rawson, S.A, Phelps, T.J, Brockman, F.J, Pfiffner, S.M

“…Twenty-six subsurface samples were collected from a borehole at depths of 173.3 to 196.8 m in the saturated zone at the Hanford Site in south-central…”
Get full text

Physiological Diversity and Distributions of Heterotrophic Bacteria in Deep Cretaceous Sediments of the Atlantic Coastal Plain by FREDRICKSON, J. K, BALKWILL, D. L, ZACHARA, J. M, LI, S.-M. W, BROCKMAN, F. J, SIMMONS, M. A

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
Get full text

Effect of gaseous nitrogen and phosphorus injection on in situ bioremediation of a trichloroethylene-contaminated site by Brockman, F.J., Payne, W., Workman, D.J., Soong, A., Manley, S., Hazen, T.C.

“…Methane and air were injected through a horizontal well into a trichloroethylene-contaminated site at a depth of 160ft below ground surface to stimulate…”
Get full text

Isolation and Characterization of a Subsurface Bacterium Capable of Growth on Toluene, Naphthalene, and Other Aromatic Compounds by FREDRICKSON, J. K, BROCKMAN, F. J, WORKMAN, D. J, LI, S. W, STEVENS, T. O

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
Get full text

Microbiology of vadose zone paleosols in south-central Washington state by Brockman, F.J. (Pacific Northwest Laboratory, Richland, WA), Kieft, T.L, Fredrickson, J.K, Bjornstad, B.N, Li, S.M.W, Spangenburg, W, Long, P.E

“…Three unsaturated subsurface paleosols influenced by moisture recharge, including a highly developed calcic paleosol, were studied to investigate the…”
Get full text

Post-Sampling Changes in Microbial Community Composition and Activity in a Subsurface Paleosol by F. J. Brockman, S. W. Li, Fredrickson, J. K., D. B. Ringelberg, T. L. Kieft, C. M. Spadoni, White, D. C., J. P. Mc Kinley

“…Laboratory storage of deep vadose zone sediments has previously resulted in an increase in the abundance of cultured microorganisms by as much as 10,000-fold,…”
Get full text

Recruitment and expression of toluene/trichloroethylene biodegradation genes in bacteria native to deep-subsurface sediments by Romine, M.F. (Pacific Northwest National Lab., Richland, WA.), Brockman, F.J

“…Four plasmids, each encoding a combination of either an Escherichia coli or Pseudomonas putida promoter and either toluene dioxygenase or toluene…”
Get full text

Time-dependent changes in viable numbers and activities of aerobic heterotrophic bacteria in subsurface samples by Fredrickson, J.K., Li, S.W., Brockman, F.J., Haldeman, D.L., Amy, P.S., Balkwill, D.L.

“…Vadose and saturated zone sediment cores from depths to 212 m were obtained from the U.S. Department of Energy's Hanford Site in south-central Washington by…”
Get full text

Enumeration of Tn5 mutant bacteria in soil by using a most-probable-number-DNA hybridization procedure and antibiotic resistance by Fredrickson, J.K, Bezdicek, D.F, Brockman, F.J, Li, S.W

“…Investigations were made into the utility of DNA hybridization in conjunction with a microdilution most-probable-number procedure for the enumeration of…”
Get full text

Diversity within serogroups of Rhizobium leguminosarum biovar viceae in the Palouse region of eastern Washington as indicated by plasmid profiles, intrinsic antibiotic resistance, and topography by Brockman, F.J, Bezdicek, D.F

“…Serology, plasmid profiles, and intrinsic antibiotic resistance (IAR) were determined for 192 isolates of Rhizobium leguminosarum biovar viceae from nodules of…”
Get full text

Plasmid Incidence in Bacteria from Deep Subsurface Sediments by FREDRICKSON, J. K, HICKS, R. J, LI, S. W, BROCKMAN, F. J

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
Get full text